RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 INTS4Q96HW7 963 aaKnown RBP20.58■□□□□ 0.89
UPF3A-206ENST00000480362 MYL10Q9BUA6 226 aa20.58■□□□□ 0.89
UPF3A-206ENST00000480362 KAT14Q9H8E8 782 aa20.58■□□□□ 0.89
UPF3A-206ENST00000480362 STX8Q9UNK0 236 aa20.58■□□□□ 0.89
UPF3A-206ENST00000480362 VEGFAP15692 232 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-206ENST00000480362 RXRAP19793 462 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 NOVP48745 357 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 JAG1P78504 1218 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 SHROOM1Q2M3G4 852 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-206ENST00000480362 DCAF15Q66K64 600 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 TMEM179Q6ZVK1 233 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 CATIPQ7Z7H3 387 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 MICU3Q86XE3 530 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 TMEM47Q9BQJ4 181 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 NCOA5Q9HCD5 579 aaKnown RBP20.57■□□□□ 0.88
UPF3A-206ENST00000480362 CABP5Q9NP86 173 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 MTMR4Q9NYA4 1195 aa20.57■□□□□ 0.88
UPF3A-206ENST00000480362 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-206ENST00000480362 ADM5C9JUS6 153 aa20.56■□□□□ 0.88
UPF3A-206ENST00000480362 GH2P01242 217 aa20.56■□□□□ 0.88
UPF3A-206ENST00000480362 METAP2P50579 478 aaKnown RBP eCLIP20.56■□□□□ 0.88
UPF3A-206ENST00000480362 SUPT20HL1Q3ZLR7 823 aa20.56■□□□□ 0.88
UPF3A-206ENST00000480362 KRT26Q7Z3Y9 468 aa20.56■□□□□ 0.88
UPF3A-206ENST00000480362 CLEC10AQ8IUN9 316 aa20.56■□□□□ 0.88
UPF3A-206ENST00000480362 GOLGA8AA7E2F4 631 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 PHF20L1A8MW92 1017 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 TOP1P11387 765 aaKnown RBP20.55■□□□□ 0.88
UPF3A-206ENST00000480362 GUCY1A2P33402 732 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 SEPT2Q15019 361 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 PPP4R3BQ5MIZ7 849 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 DLK2Q6UY11 383 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 USP48Q86UV5 1035 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 CCDC144CPQ8IYA2 1237 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 NUP133Q8WUM0 1156 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 CHMP4CQ96CF2 233 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 ZNF341Q9BYN7 854 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 KANSL2Q9H9L4 492 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 CLIP2Q9UDT6 1046 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 CLEC11AQ9Y240 323 aa20.55■□□□□ 0.88
UPF3A-206ENST00000480362 GREB1LQ9C091 1923 aaPredicted RBP20.55■□□□□ 0.88
UPF3A-206ENST00000480362 DTNBO60941 627 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 DDAH1O94760 285 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 TTLL1O95922 423 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 CALM1P0DP23 149 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 CALM2P0DP24 149 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 CALM3P0DP25 149 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 CAP2P40123 477 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 RCAN1P53805 252 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 PNMA1Q8ND90 353 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 SMC3Q9UQE7 1217 aa20.54■□□□□ 0.88
UPF3A-206ENST00000480362 DHX16O60231 1041 aaKnown RBP20.53■□□□□ 0.88
UPF3A-206ENST00000480362 CDC27P30260 824 aa20.53■□□□□ 0.88
UPF3A-206ENST00000480362 ATP2B2Q01814 1243 aa20.53■□□□□ 0.88
UPF3A-206ENST00000480362 TROAPQ12815 778 aa20.53■□□□□ 0.88
UPF3A-206ENST00000480362 RAB3GAP1Q15042 981 aa20.53■□□□□ 0.88
UPF3A-206ENST00000480362 FANCBQ8NB91 859 aa20.53■□□□□ 0.88
UPF3A-206ENST00000480362 LLPHQ9BRT6 129 aaKnown RBP20.53■□□□□ 0.88
UPF3A-206ENST00000480362 CWC22Q9HCG8 908 aaKnown RBP20.53■□□□□ 0.88
UPF3A-206ENST00000480362 FAM217BQ9NTX9 383 aaPredicted RBP20.53■□□□□ 0.88
UPF3A-206ENST00000480362 NYAP2Q9P242 653 aa20.53■□□□□ 0.88
UPF3A-206ENST00000480362 UTRNP46939 3433 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 NID2Q14112 1375 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 CTDNEP1O95476 244 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 POTEIP0CG38 1075 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 POTEJP0CG39 1038 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 EEF2P13639 858 aaKnown RBP20.52■□□□□ 0.88
UPF3A-206ENST00000480362 ADD1P35611 737 aaKnown RBP20.52■□□□□ 0.88
UPF3A-206ENST00000480362 RTN1Q16799 776 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 CDC37L1Q7L3B6 337 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 SIAH1Q8IUQ4 282 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 ZNF526Q8TF50 670 aaPredicted RBP20.52■□□□□ 0.88
UPF3A-206ENST00000480362 GLIS2Q9BZE0 524 aaPredicted RBP20.52■□□□□ 0.88
UPF3A-206ENST00000480362 ZNF112Q9UJU3 913 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 ZBTB21Q9ULJ3 1066 aa20.52■□□□□ 0.88
UPF3A-206ENST00000480362 CPLX1O14810 134 aa20.51■□□□□ 0.87
UPF3A-206ENST00000480362 CTNND1O60716 968 aaKnown RBP20.51■□□□□ 0.87
UPF3A-206ENST00000480362 ICA1Q05084 483 aa20.51■□□□□ 0.87
UPF3A-206ENST00000480362 NSUN7Q8NE18 718 aaKnown RBP20.51■□□□□ 0.87
UPF3A-206ENST00000480362 MKL1Q969V6 931 aa20.51■□□□□ 0.87
UPF3A-206ENST00000480362 NMRK2Q9NPI5 230 aa20.51■□□□□ 0.87
UPF3A-206ENST00000480362 SSC5DA1L4H1 1573 aa20.51■□□□□ 0.87
UPF3A-206ENST00000480362 CCDC196A0A1B0GTZ2 297 aa20.5■□□□□ 0.87
UPF3A-206ENST00000480362 JAK2O60674 1132 aa20.5■□□□□ 0.87
UPF3A-206ENST00000480362 GJB2P29033 226 aa20.5■□□□□ 0.87
UPF3A-206ENST00000480362 PPP2R5BQ15173 497 aa20.5■□□□□ 0.87
UPF3A-206ENST00000480362 LRRC47Q8N1G4 583 aaKnown RBP20.5■□□□□ 0.87
UPF3A-206ENST00000480362 CTCFLQ8NI51 663 aaPredicted RBP20.5■□□□□ 0.87
UPF3A-206ENST00000480362 CDCA5Q96FF9 252 aa20.5■□□□□ 0.87
UPF3A-206ENST00000480362 MAP3K14Q99558 947 aa20.5■□□□□ 0.87
UPF3A-206ENST00000480362 FZD1Q9UP38 647 aa20.5■□□□□ 0.87
UPF3A-206ENST00000480362 MTMR7Q9Y216 660 aa20.5■□□□□ 0.87
UPF3A-206ENST00000480362 USP2O75604 605 aaPredicted RBP20.49■□□□□ 0.87
UPF3A-206ENST00000480362 ASNSP08243 561 aa20.49■□□□□ 0.87
UPF3A-206ENST00000480362 INPP5BP32019 993 aa20.49■□□□□ 0.87
UPF3A-206ENST00000480362 DDIT3P35638 169 aa20.49■□□□□ 0.87
UPF3A-206ENST00000480362 PRKG1Q13976 671 aa20.49■□□□□ 0.87
UPF3A-206ENST00000480362 CPLX2Q6PUV4 134 aaKnown RBP20.49■□□□□ 0.87
UPF3A-206ENST00000480362 SMARCC2Q8TAQ2 1214 aa20.49■□□□□ 0.87
UPF3A-206ENST00000480362 GINM1Q9NU53 330 aa20.49■□□□□ 0.87
UPF3A-206ENST00000480362 RBM28Q9NW13 759 aaKnown RBP20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms