RNA–Protein interactions for RNA: ENST00000480057.1

VTI1A-204, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-204ENST00000480057 HDAC9Q9UKV0 1011 aa12.78□□□□□ -0.36
VTI1A-204ENST00000480057 ATF5Q9Y2D1 282 aaPredicted RBP12.78□□□□□ -0.36
VTI1A-204ENST00000480057 FSD2A1L4K1 749 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 LETM1O95202 739 aaPredicted RBP12.77□□□□□ -0.37
VTI1A-204ENST00000480057 U2AF2P26368 475 aaKnown RBP eCLIP12.77□□□□□ -0.37
VTI1A-204ENST00000480057 SMARCA1P28370 1054 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 PICALMQ13492 652 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 GRM4Q14833 912 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 SAFBQ15424 915 aaKnown RBP eCLIP12.77□□□□□ -0.37
VTI1A-204ENST00000480057 L1TD1Q5T7N2 865 aaKnown RBP12.77□□□□□ -0.37
VTI1A-204ENST00000480057 KRT40Q6A162 431 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 CAVIN1Q6NZI2 390 aaKnown RBP12.77□□□□□ -0.37
VTI1A-204ENST00000480057 MTMR14Q8NCE2 650 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 PNMA1Q8ND90 353 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 TAOK3Q9H2K8 898 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 GDPD2Q9HCC8 539 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 ZNF277Q9NRM2 450 aaPredicted RBP12.77□□□□□ -0.37
VTI1A-204ENST00000480057 RCOR1Q9UKL0 485 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 ATRNL1Q5VV63 1379 aa12.77□□□□□ -0.37
VTI1A-204ENST00000480057 IGKV6D-41A0A0C4DH26 115 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 NMT2O60551 498 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 GADD45BO75293 160 aaPredicted RBP12.76□□□□□ -0.37
VTI1A-204ENST00000480057 YEATS4O95619 227 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 TOP1P11387 765 aaKnown RBP12.76□□□□□ -0.37
VTI1A-204ENST00000480057 GUCY1B3Q02153 619 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 CFAP100Q494V2 611 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 ILDR1Q86SU0 546 aaPredicted RBP12.76□□□□□ -0.37
VTI1A-204ENST00000480057 FOXP4Q8IVH2 680 aaPredicted RBP12.76□□□□□ -0.37
VTI1A-204ENST00000480057 SLC44A5Q8NCS7 719 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 GZF1Q9H116 711 aaPredicted RBP12.76□□□□□ -0.37
VTI1A-204ENST00000480057 FOXP1Q9H334 677 aaPredicted RBP12.76□□□□□ -0.37
VTI1A-204ENST00000480057 POLR3EQ9NVU0 708 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 RTEL1Q9NZ71 1219 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 PI4KBQ9UBF8 816 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 COL4A5P29400 1685 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 ARFGEF1Q9Y6D6 1849 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 MYH6P13533 1939 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 MYH8P13535 1937 aa12.76□□□□□ -0.37
VTI1A-204ENST00000480057 GREB1LQ9C091 1923 aaPredicted RBP12.76□□□□□ -0.37
VTI1A-204ENST00000480057 GOLGA6L3A6NEY3 463 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 PSMD14O00487 310 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 MMP1P03956 469 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 PTGER2P43116 358 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 RBM5P52756 815 aaKnown RBP eCLIP12.75□□□□□ -0.37
VTI1A-204ENST00000480057 ZSCAN23Q3MJ62 389 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 FKBP1CQ5VVH2 108 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 MYSM1Q5VVJ2 828 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 FAM173BQ6P4H8 233 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 METTL16Q86W50 562 aaKnown RBP12.75□□□□□ -0.37
VTI1A-204ENST00000480057 OGFOD1Q8N543 542 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 CNTNAP5Q8WYK1 1306 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 TMEM47Q9BQJ4 181 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 TMOD2Q9NZR1 351 aa12.75□□□□□ -0.37
VTI1A-204ENST00000480057 GOLGA6L4A6NEF3 574 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 SPDYE2BA6NHP3 402 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 PLEKHA8P1O95397 391 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 SPDYE6P0CI01 402 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 NASPP49321 788 aaPredicted RBP12.74□□□□□ -0.37
VTI1A-204ENST00000480057 FOSBP53539 338 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 NFIAQ12857 509 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 TNIP1Q15025 636 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 PKN1Q16512 942 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 SLC4A8Q2Y0W8 1093 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 CCDC183Q5T5S1 534 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 KCNG4Q8TDN1 519 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 JDP2Q8WYK2 163 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 USP28Q96RU2 1077 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.74□□□□□ -0.37
VTI1A-204ENST00000480057 SH3GLB2Q9NR46 395 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 TMEM63CQ9P1W3 806 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 TFIP11Q9UBB9 837 aaKnown RBP12.74□□□□□ -0.37
VTI1A-204ENST00000480057 FAM198AQ9UFP1 575 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 SIPA1L1O43166 1804 aa12.74□□□□□ -0.37
VTI1A-204ENST00000480057 PALM3A6NDB9 673 aaPredicted RBP12.73□□□□□ -0.37
VTI1A-204ENST00000480057 RPS12P25398 132 aaKnown RBP12.73□□□□□ -0.37
VTI1A-204ENST00000480057 SHMT1P34896 483 aa12.73□□□□□ -0.37
VTI1A-204ENST00000480057 GNL2Q13823 731 aaKnown RBP12.73□□□□□ -0.37
VTI1A-204ENST00000480057 DLGAP5Q15398 846 aa12.73□□□□□ -0.37
VTI1A-204ENST00000480057 CIAPIN1Q6FI81 312 aa12.73□□□□□ -0.37
VTI1A-204ENST00000480057 OTUD7BQ6GQQ9 843 aa12.73□□□□□ -0.37
VTI1A-204ENST00000480057 SRBD1Q8N5C6 995 aaKnown RBP12.73□□□□□ -0.37
VTI1A-204ENST00000480057 CEP95Q96GE4 821 aa12.73□□□□□ -0.37
VTI1A-204ENST00000480057 AIFM3Q96NN9 605 aa12.73□□□□□ -0.37
VTI1A-204ENST00000480057 SPZ1Q9BXG8 430 aa12.73□□□□□ -0.37
VTI1A-204ENST00000480057 MTMR4Q9NYA4 1195 aa12.73□□□□□ -0.37
VTI1A-204ENST00000480057 STX8Q9UNK0 236 aa12.73□□□□□ -0.37
VTI1A-204ENST00000480057 MORC2Q9Y6X9 1032 aaPredicted RBP12.73□□□□□ -0.37
VTI1A-204ENST00000480057 A0A1W2PQ27 194 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 A0A1W2PQ64 194 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 A0A1W2PQD8 194 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 KIF28PB7ZC32 967 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 NFKBIEO00221 500 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 PPFIA3O75145 1194 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 RAD17O75943 681 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 TTLL1O95922 423 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 SCG2P13521 617 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 GUCY1A2P33402 732 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 MRE11P49959 708 aa12.72□□□□□ -0.37
VTI1A-204ENST00000480057 PFKFB3Q16875 520 aaPredicted RBP12.72□□□□□ -0.37
VTI1A-204ENST00000480057 RILPL1Q5EBL4 403 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms