RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 C11orf49Q9H6J7 331 aa16.09■□□□□ 0.17
VCL-205ENST00000478896 MAGEB6P1A0A0J9YX57 407 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 A0A1W2PPC1 479 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 USP17L15C9J2P7 530 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 USP17L13C9JLJ4 530 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 USP17L11C9JVI0 530 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 USP17L18D6R9N7 530 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 USP17L22D6RA61 530 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 USP17L17D6RBQ6 530 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 USP17L19D6RCP7 530 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 USP17L20D6RJB6 530 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 APBB1O00213 710 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 CCNA1P78396 465 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 USP17L24Q0WX57 530 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 MIER1Q8N108 512 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 RHPN1Q8TCX5 695 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 DNAJC2Q99543 621 aaKnown RBP16.08■□□□□ 0.16
VCL-205ENST00000478896 STAP2Q9UGK3 403 aa16.08■□□□□ 0.16
VCL-205ENST00000478896 ZMYND8Q9ULU4 1186 aaPredicted RBP16.08■□□□□ 0.16
VCL-205ENST00000478896 MYH8P13535 1937 aa16.07■□□□□ 0.16
VCL-205ENST00000478896 VCAM1P19320 739 aa16.07■□□□□ 0.16
VCL-205ENST00000478896 MAP3K21Q5TCX8 1036 aa16.07■□□□□ 0.16
VCL-205ENST00000478896 CLASRPQ8N2M8 674 aaKnown RBP16.07■□□□□ 0.16
VCL-205ENST00000478896 RIOK1Q9BRS2 568 aaKnown RBP16.07■□□□□ 0.16
VCL-205ENST00000478896 CRNKL1Q9BZJ0 848 aaKnown RBP16.07■□□□□ 0.16
VCL-205ENST00000478896 OGDHLQ9ULD0 1010 aa16.07■□□□□ 0.16
VCL-205ENST00000478896 RABGAP1Q9Y3P9 1069 aa16.07■□□□□ 0.16
VCL-205ENST00000478896 ZBED9Q6R2W3 1325 aa16.07■□□□□ 0.16
VCL-205ENST00000478896 FRMPD3Q5JV73 1810 aa16.07■□□□□ 0.16
VCL-205ENST00000478896 MPHOSPH10O00566 681 aaKnown RBP16.06■□□□□ 0.16
VCL-205ENST00000478896 GLRX3O76003 335 aaKnown RBP16.06■□□□□ 0.16
VCL-205ENST00000478896 IFIT2P09913 472 aaKnown RBP16.06■□□□□ 0.16
VCL-205ENST00000478896 PLCD1P51178 756 aa16.06■□□□□ 0.16
VCL-205ENST00000478896 CACNB2Q08289 660 aaPredicted RBP16.06■□□□□ 0.16
VCL-205ENST00000478896 CCL14Q16627 93 aa16.06■□□□□ 0.16
VCL-205ENST00000478896 SLC9C2Q5TAH2 1124 aa16.06■□□□□ 0.16
VCL-205ENST00000478896 KIAA1683Q9H0B3 1180 aa16.06■□□□□ 0.16
VCL-205ENST00000478896 MCM9Q9NXL9 1143 aa16.06■□□□□ 0.16
VCL-205ENST00000478896 IVNS1ABPQ9Y6Y0 642 aa16.06■□□□□ 0.16
VCL-205ENST00000478896 GOLIM4O00461 696 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 HMMRO75330 724 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 MS4A1P11836 297 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 PDE6AP16499 860 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 SYN1P17600 705 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 CCND3P30281 292 aaPredicted RBP16.05■□□□□ 0.16
VCL-205ENST00000478896 SHMT1P34896 483 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 MAP2K5Q13163 448 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 MORN1Q5T089 497 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 CATSPERGQ6ZRH7 1159 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 ACER1Q8TDN7 264 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 KIF1BPQ96EK5 621 aa16.05■□□□□ 0.16
VCL-205ENST00000478896 RPAP3Q9H6T3 665 aaPredicted RBP16.05■□□□□ 0.16
VCL-205ENST00000478896 ZNF532Q9HCE3 1301 aa16.04■□□□□ 0.16
VCL-205ENST00000478896 CNMDO75829 334 aa16.04■□□□□ 0.16
VCL-205ENST00000478896 MNX1P50219 401 aaPredicted RBP16.04■□□□□ 0.16
VCL-205ENST00000478896 SEPT2Q15019 361 aa16.04■□□□□ 0.16
VCL-205ENST00000478896 SDR42E1Q8WUS8 393 aa16.04■□□□□ 0.16
VCL-205ENST00000478896 USP6NLQ92738 828 aa16.04■□□□□ 0.16
VCL-205ENST00000478896 PFASO15067 1338 aa16.03■□□□□ 0.16
VCL-205ENST00000478896 SPDYE16A6NNV3 312 aaPredicted RBP16.03■□□□□ 0.16
VCL-205ENST00000478896 MFSD14CQ5VZR4 134 aa16.03■□□□□ 0.16
VCL-205ENST00000478896 DIEXFQ68CQ4 756 aaKnown RBP16.03■□□□□ 0.16
VCL-205ENST00000478896 POTEEQ6S8J3 1075 aa16.03■□□□□ 0.16
VCL-205ENST00000478896 LCORLQ8N3X6 602 aa16.03■□□□□ 0.16
VCL-205ENST00000478896 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.03■□□□□ 0.16
VCL-205ENST00000478896 EDC3Q96F86 508 aaKnown RBP16.03■□□□□ 0.16
VCL-205ENST00000478896 TANGO6Q9C0B7 1094 aa16.03■□□□□ 0.16
VCL-205ENST00000478896 DDX19BQ9UMR2 479 aa16.03■□□□□ 0.16
VCL-205ENST00000478896 SOX1O00570 391 aaPredicted RBP16.02■□□□□ 0.16
VCL-205ENST00000478896 GUCY1A2P33402 732 aa16.02■□□□□ 0.16
VCL-205ENST00000478896 GABPAQ06546 454 aa16.02■□□□□ 0.16
VCL-205ENST00000478896 LBX2Q6XYB7 198 aa16.02■□□□□ 0.16
VCL-205ENST00000478896 RPAP2Q8IXW5 612 aaPredicted RBP16.02■□□□□ 0.16
VCL-205ENST00000478896 LRCH3Q96II8 777 aa16.02■□□□□ 0.16
VCL-205ENST00000478896 GDF15Q99988 308 aa16.02■□□□□ 0.16
VCL-205ENST00000478896 BTBD7Q9P203 1132 aa16.02■□□□□ 0.16
VCL-205ENST00000478896 COG6Q9Y2V7 657 aa16.02■□□□□ 0.16
VCL-205ENST00000478896 MYH7P12883 1935 aa16.02■□□□□ 0.15
VCL-205ENST00000478896 BAZ2AQ9UIF9 1905 aaKnown RBP16.02■□□□□ 0.15
VCL-205ENST00000478896 SLC15A5A6NIM6 579 aa16.01■□□□□ 0.15
VCL-205ENST00000478896 PTPREP23469 700 aa16.01■□□□□ 0.15
VCL-205ENST00000478896 CNGA1P29973 690 aa16.01■□□□□ 0.15
VCL-205ENST00000478896 BMP8BP34820 402 aa16.01■□□□□ 0.15
VCL-205ENST00000478896 ATP2B2Q01814 1243 aa16.01■□□□□ 0.15
VCL-205ENST00000478896 DCP1AQ9NPI6 582 aaPredicted RBP16.01■□□□□ 0.15
VCL-205ENST00000478896 SWAP70Q9UH65 585 aa16.01■□□□□ 0.15
VCL-205ENST00000478896 RAB11FIP3O75154 756 aa16■□□□□ 0.15
VCL-205ENST00000478896 MAGEA10P43363 369 aaPredicted RBP16■□□□□ 0.15
VCL-205ENST00000478896 EVX2Q03828 476 aa16■□□□□ 0.15
VCL-205ENST00000478896 GRB14Q14449 540 aa16■□□□□ 0.15
VCL-205ENST00000478896 TMEM179Q6ZVK1 233 aa16■□□□□ 0.15
VCL-205ENST00000478896 AMOTL1Q8IY63 956 aa16■□□□□ 0.15
VCL-205ENST00000478896 SLC44A5Q8NCS7 719 aa16■□□□□ 0.15
VCL-205ENST00000478896 DDX24Q9GZR7 859 aaKnown RBP eCLIP16■□□□□ 0.154e-7■■□□□ 14.3
VCL-205ENST00000478896 BOLA2Q9H3K6 86 aa16■□□□□ 0.15
VCL-205ENST00000478896 ARMT1Q9H993 441 aa16■□□□□ 0.15
VCL-205ENST00000478896 ARHGEF10LQ9HCE6 1279 aa16■□□□□ 0.15
VCL-205ENST00000478896 PAG1Q9NWQ8 432 aa16■□□□□ 0.15
VCL-205ENST00000478896 FLRT1Q9NZU1 646 aa16■□□□□ 0.15
VCL-205ENST00000478896 A0A0G2JMZ2 1700 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms