RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	CCDC66	A2RUB6	948 aa		5.82	□□□□□ -1.48
PTCD3-212	ENST00000477520	PHACTR2	O75167	634 aa		5.82	□□□□□ -1.48
PTCD3-212	ENST00000477520	PCSK2	P16519	638 aa		5.82	□□□□□ -1.48
PTCD3-212	ENST00000477520	PCDH1	Q08174	1060 aa		5.82	□□□□□ -1.48
PTCD3-212	ENST00000477520	AXDND1	Q5T1B0	1012 aa	Predicted RBP	5.82	□□□□□ -1.48
PTCD3-212	ENST00000477520	SASS6	Q6UVJ0	657 aa		5.82	□□□□□ -1.48
PTCD3-212	ENST00000477520	TMC1	Q8TDI8	760 aa		5.82	□□□□□ -1.48
PTCD3-212	ENST00000477520	ANTXR1	Q9H6X2	564 aa		5.82	□□□□□ -1.48
PTCD3-212	ENST00000477520	DEPDC5	O75140	1603 aa		5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	UNC13B	O14795	1591 aa		5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	PRDM15	P57071	1507 aa	Predicted RBP	5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	KDM5D	Q9BY66	1539 aa		5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	EIF1AX	P47813	144 aa	Known RBP	5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	POU4F3	Q15319	338 aa		5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	NOM1	Q5C9Z4	860 aa	Known RBP	5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	PDCL2	Q8N4E4	241 aa		5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	NETO1	Q8TDF5	533 aa		5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	HELQ	Q8TDG4	1101 aa		5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	MISP3	Q96FF7	219 aa		5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	GBP4	Q96PP9	640 aa		5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	TRIM56	Q9BRZ2	755 aa	Known RBP	5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	ZC3H13	Q5T200	1668 aa	Known RBP	5.81	□□□□□ -1.48
PTCD3-212	ENST00000477520	SETD1B	Q9UPS6	1966 aa	Known RBP	5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	CLGN	O14967	610 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	ZSCAN20	P17040	1043 aa	Predicted RBP	5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	RIPK4	P57078	832 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	CDK5R2	Q13319	367 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	SPRED3	Q2MJR0	410 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	KRTAP19-4	Q3LI73	84 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	NGEF	Q8N5V2	710 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	PI4K2B	Q8TCG2	481 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	SNX29	Q8TEQ0	813 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	MPHOSPH9	Q99550	1183 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	SLC38A3	Q99624	504 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	FEZ1	Q99689	392 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	YY1AP1	Q9H869	796 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	RAD18	Q9NS91	495 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	TMEM51	Q9NW97	253 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	PPP1R9A	Q9ULJ8	1098 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	NOL7	Q9UMY1	257 aa	Known RBP	5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	POLI	Q9UNA4	740 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	IQGAP3	Q86VI3	1631 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	SPATA31E1	Q6ZUB1	1445 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	FER1L4	A9Z1Z3	1794 aa		5.8	□□□□□ -1.48
PTCD3-212	ENST00000477520	LMTK2	Q8IWU2	1503 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	MYBBP1A	Q9BQG0	1328 aa	Known RBP	5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	VIRMA	Q69YN4	1812 aa	Known RBP	5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	GOLGA6L22	H0YM25	854 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	ATG7	O95352	703 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	CYP11A1	P05108	521 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	ATP2B4	P23634	1241 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	MPST	P25325	297 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	GRIA4	P48058	902 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	CYP27C1	Q4G0S4	372 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	CCDC184	Q52MB2	194 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	C1QL4	Q86Z23	238 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	HOMEZ	Q8IX15	550 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	TTC16	Q8NEE8	873 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	FAM84A	Q96KN4	292 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	HIRIP3	Q9BW71	556 aa	Predicted RBP	5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	CLEC4M	Q9H2X3	399 aa	Predicted RBP	5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	CFAP65	Q6ZU64	1925 aa	Known RBP	5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	VWDE	Q8N2E2	1590 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	SIGLEC1	Q9BZZ2	1709 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	ABCC3	O15438	1527 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	MROH2A	A6NES4	1674 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	TET3	O43151	1660 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	ADAMTSL3	P82987	1691 aa		5.79	□□□□□ -1.48
PTCD3-212	ENST00000477520	RPRD2	Q5VT52	1461 aa	Known RBP	5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	MROH1	Q8NDA8	1641 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	UQCRHL	A0A096LP55	91 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520		A0A096LPE4	126 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520		A0A1W2PPZ6	126 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	LRRC10B	A6NIK2	292 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	AOC2	O75106	756 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	POLR3D	P05423	398 aa	Predicted RBP	5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	UQCRH	P07919	91 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	FAM87A	P0C7U9	286 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	CFP	P27918	469 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	GTF2F1	P35269	517 aa	Known RBP eCLIP	5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	IRX3	P78415	501 aa	Predicted RBP	5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	PRKCQ	Q04759	706 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	GABPB1	Q06547	395 aa	Predicted RBP	5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	ARHGAP31	Q2M1Z3	1444 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	DNTTIP2	Q5QJE6	756 aa	Known RBP	5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	LCNL1	Q6ZST4	164 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	WDR18	Q9BV38	432 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	VAV3	Q9UKW4	847 aa		5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	CLTC	Q00610	1675 aa	Known RBP	5.78	□□□□□ -1.48
PTCD3-212	ENST00000477520	CEP152	O94986	1710 aa		5.77	□□□□□ -1.49
PTCD3-212	ENST00000477520	ZNF503-AS2	A6NEH8	195 aa		5.77	□□□□□ -1.49
PTCD3-212	ENST00000477520	EIF4EBP3	O60516	100 aa	Predicted RBP	5.77	□□□□□ -1.49
PTCD3-212	ENST00000477520	HSP90AB1	P08238	724 aa	Known RBP	5.77	□□□□□ -1.49
PTCD3-212	ENST00000477520	MTMR3	Q13615	1198 aa		5.77	□□□□□ -1.49
PTCD3-212	ENST00000477520	CTR9	Q6PD62	1173 aa		5.77	□□□□□ -1.49
PTCD3-212	ENST00000477520	CLEC17A	Q6ZS10	378 aa		5.77	□□□□□ -1.49
PTCD3-212	ENST00000477520	CCNJL	Q8IV13	435 aa		5.77	□□□□□ -1.49
PTCD3-212	ENST00000477520	TCF12	Q99081	682 aa		5.77	□□□□□ -1.49
PTCD3-212	ENST00000477520	KRTAP17-1	Q9BYP8	105 aa		5.77	□□□□□ -1.49

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