RNA–Protein interactions for RNA: ENST00000476590.1

CD55-208, Transcript of CD55 molecule (Cromer blood group), humanhuman

TSL 1 (best)

Gene CD55, Length 2,163 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD55-208ENST00000476590 TSC22D3Q99576 134 aa4.68□□□□□ -1.66
CD55-208ENST00000476590 MAK16Q9BXY0 300 aaKnown RBP4.68□□□□□ -1.66
CD55-208ENST00000476590 YIPF3Q9GZM5 350 aa4.68□□□□□ -1.66
CD55-208ENST00000476590 BICC1Q9H694 974 aaKnown RBP4.68□□□□□ -1.66
CD55-208ENST00000476590 LUC7LQ9NQ29 371 aaKnown RBP4.68□□□□□ -1.66
CD55-208ENST00000476590 JADE2Q9NQC1 790 aa4.68□□□□□ -1.66
CD55-208ENST00000476590 DDX56Q9NY93 547 aaKnown RBP4.68□□□□□ -1.66
CD55-208ENST00000476590 KLF15Q9UIH9 416 aa4.68□□□□□ -1.66
CD55-208ENST00000476590 ZDHHC9Q9Y397 364 aa4.68□□□□□ -1.66
CD55-208ENST00000476590 PLB1Q6P1J6 1458 aa4.68□□□□□ -1.66
CD55-208ENST00000476590 COL17A1Q9UMD9 1497 aaPredicted RBP4.68□□□□□ -1.66
CD55-208ENST00000476590 E9PCH4 1651 aa4.68□□□□□ -1.66
CD55-208ENST00000476590 BCORL1Q5H9F3 1711 aa4.68□□□□□ -1.66
CD55-208ENST00000476590 RPAP1Q9BWH6 1393 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 CCDC151A5D8V7 595 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 KRBA1A5PL33 1030 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 GNAT1P11488 350 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 HOXD10P28358 340 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 CDC25BP30305 580 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 INHBCP55103 352 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 MDM2Q00987 491 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 TMEM62Q0P6H9 643 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 SNW1Q13573 536 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 PKP1Q13835 747 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 LONRF2Q1L5Z9 754 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 LARP1BQ659C4 914 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 HDXQ7Z353 690 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 HOOK3Q86VS8 718 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 NT5DC4Q86YG4 428 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 CEP57L1Q8IYX8 460 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 SYCP3Q8IZU3 236 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 KIRREL3Q8IZU9 778 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 CCAR2Q8N163 923 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 CACTINQ8WUQ7 758 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 DDX12PQ92771 950 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 IL17RAQ96F46 866 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 SPAG5Q96R06 1193 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 FUCA2Q9BTY2 467 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 PLEKHA4Q9H4M7 779 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 SPC25Q9HBM1 224 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 QPCTLQ9NXS2 382 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 TUBA8Q9NY65 449 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 TUBGCP4Q9UGJ1 667 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 PHF24Q9UPV7 400 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 GMEB1Q9Y692 573 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 NKTRP30414 1462 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 LRRC9Q6ZRR7 1453 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 TTC41PQ6P2S7 1318 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 HFM1A2PYH4 1435 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 GAPVD1Q14C86 1478 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 ZSCAN12O43309 604 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 RASSF9O75901 435 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 S100BP04271 92 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 RPSAP08865 295 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 SYT1P21579 422 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 SSTR3P32745 418 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 CCT5P48643 541 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 MCM2P49736 904 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 KRTAP1-1Q07627 177 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 ACTN3Q08043 901 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 VAC14Q08AM6 782 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 BTG3Q14201 252 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 NUGGCQ68CJ6 796 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 ZNF746Q6NUN9 644 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 B4GALNT4Q76KP1 1039 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 BZW1Q7L1Q6 419 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 METTL16Q86W50 562 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 RPAP2Q8IXW5 612 aaPredicted RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 MYO1HQ8N1T3 1032 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 AFAP1L1Q8TED9 768 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 HNRNPLLQ8WVV9 542 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 NLRP7Q8WX94 980 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 LZICQ8WZA0 190 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 TSR2Q969E8 191 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 SH3GL1Q99961 368 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.67□□□□□ -1.66
CD55-208ENST00000476590 SEZ6LQ9BYH1 1024 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 ZWILCHQ9H900 591 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 CAPN10Q9HC96 672 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 PDE11AQ9HCR9 933 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 EMILIN3Q9NT22 766 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 ZNHIT6Q9NWK9 470 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 HOXC10Q9NYD6 342 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 SFMBT1Q9UHJ3 866 aa4.67□□□□□ -1.66
CD55-208ENST00000476590 TTF2Q9UNY4 1162 aaKnown RBP4.67□□□□□ -1.66
CD55-208ENST00000476590 PHLPP2Q6ZVD8 1323 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 ZNF644Q9H582 1327 aaPredicted RBP4.66□□□□□ -1.66
CD55-208ENST00000476590 PLXNC1O60486 1568 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 FYCO1Q9BQS8 1478 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 FAM135AQ9P2D6 1515 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 GRXCR2A6NFK2 248 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 USP27XA6NNY8 438 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 B4DLN1 442 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 PARP1P09874 1014 aaKnown RBP4.66□□□□□ -1.66
CD55-208ENST00000476590 MSL3P1P0C860 447 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 ALOX15P16050 662 aaPredicted RBP4.66□□□□□ -1.66
CD55-208ENST00000476590 MCM3P25205 808 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 USP11P51784 963 aa4.66□□□□□ -1.66
CD55-208ENST00000476590 ZNF75DP51815 510 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms