RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 BRMS1Q9HCU9 246 aa7.92□□□□□ -1.14
PTCD3-211ENST00000476215 PRDM5Q9NQX1 630 aaPredicted RBP7.92□□□□□ -1.14
PTCD3-211ENST00000476215 PAX4O43316 350 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 BNIP3Q12983 259 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 VPS37DQ86XT2 251 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 SLITRK4Q8IW52 837 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 RASGRP4Q8TDF6 673 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 COX4I2Q96KJ9 171 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 SPATA32Q96LK8 384 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 C8orf37Q96NL8 207 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 TJP2Q9UDY2 1190 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 POLR3KQ9Y2Y1 108 aaPredicted RBP7.91□□□□□ -1.14
PTCD3-211ENST00000476215 PRR36Q9H6K5 1346 aa7.91□□□□□ -1.14
PTCD3-211ENST00000476215 PDE4BQ07343 736 aa7.9□□□□□ -1.14
PTCD3-211ENST00000476215 AOC3Q16853 763 aa7.9□□□□□ -1.14
PTCD3-211ENST00000476215 TMEM201Q5SNT2 666 aa7.9□□□□□ -1.14
PTCD3-211ENST00000476215 PRAMEF13Q5VWM6 474 aa7.9□□□□□ -1.14
PTCD3-211ENST00000476215 SLC6A19Q695T7 634 aa7.9□□□□□ -1.14
PTCD3-211ENST00000476215 GINM1Q9NU53 330 aa7.9□□□□□ -1.14
PTCD3-211ENST00000476215 EFR3BQ9Y2G0 817 aa7.9□□□□□ -1.14
PTCD3-211ENST00000476215 CORINQ9Y5Q5 1042 aa7.9□□□□□ -1.14
PTCD3-211ENST00000476215 PITPNM2Q9BZ72 1349 aa7.89□□□□□ -1.15
PTCD3-211ENST00000476215 CNTNAP4Q9C0A0 1308 aa7.89□□□□□ -1.15
PTCD3-211ENST00000476215 JUNBP17275 347 aaPredicted RBP7.89□□□□□ -1.15
PTCD3-211ENST00000476215 ZNF165P49910 485 aa7.89□□□□□ -1.15
PTCD3-211ENST00000476215 ZNF746Q6NUN9 644 aaPredicted RBP7.89□□□□□ -1.15
PTCD3-211ENST00000476215 LETMD1Q6P1Q0 360 aa7.89□□□□□ -1.15
PTCD3-211ENST00000476215 GK5Q6ZS86 529 aa7.89□□□□□ -1.15
PTCD3-211ENST00000476215 ARHGAP27Q6ZUM4 889 aa7.89□□□□□ -1.15
PTCD3-211ENST00000476215 MCATQ8IVS2 390 aaKnown RBP7.89□□□□□ -1.15
PTCD3-211ENST00000476215 MIPEPQ99797 713 aa7.89□□□□□ -1.15
PTCD3-211ENST00000476215 PCDHB14Q9Y5E9 798 aa7.89□□□□□ -1.15
PTCD3-211ENST00000476215 PGRP06401 933 aa7.88□□□□□ -1.15
PTCD3-211ENST00000476215 PLCG1P19174 1290 aa7.88□□□□□ -1.15
PTCD3-211ENST00000476215 DNAJA1P31689 397 aaKnown RBP7.88□□□□□ -1.15
PTCD3-211ENST00000476215 CLCQ05315 142 aa7.88□□□□□ -1.15
PTCD3-211ENST00000476215 ZNF792Q3KQV3 632 aa7.88□□□□□ -1.15
PTCD3-211ENST00000476215 SLC43A3Q8NBI5 491 aa7.88□□□□□ -1.15
PTCD3-211ENST00000476215 ASB11Q8WXH4 323 aa7.88□□□□□ -1.15
PTCD3-211ENST00000476215 ACSF2Q96CM8 615 aaPredicted RBP7.88□□□□□ -1.15
PTCD3-211ENST00000476215 TMEM87BQ96K49 555 aa7.88□□□□□ -1.15
PTCD3-211ENST00000476215 CAPN6Q9Y6Q1 641 aa7.88□□□□□ -1.15
PTCD3-211ENST00000476215 GNAT3A8MTJ3 354 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 HTR3BO95264 441 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 ATF4P18848 351 aaPredicted RBP7.87□□□□□ -1.15
PTCD3-211ENST00000476215 ITIH2P19823 946 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 NASPP49321 788 aaPredicted RBP7.87□□□□□ -1.15
PTCD3-211ENST00000476215 ARID5AQ03989 594 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 COL9A2Q14055 689 aaPredicted RBP7.87□□□□□ -1.15
PTCD3-211ENST00000476215 PLCL1Q15111 1095 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 SFRP5Q5T4F7 317 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 ANGEL2Q5VTE6 544 aaKnown RBP7.87□□□□□ -1.15
PTCD3-211ENST00000476215 REXO1Q8N1G1 1221 aaKnown RBP7.87□□□□□ -1.15
PTCD3-211ENST00000476215 DNAJB8Q8NHS0 232 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 RIN3Q8TB24 985 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 SEC16BQ96JE7 1060 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 FERD3LQ96RJ6 166 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 SEMA3GQ9NS98 782 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 MBNL3Q9NUK0 354 aaKnown RBP7.87□□□□□ -1.15
PTCD3-211ENST00000476215 REV1Q9UBZ9 1251 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 ADAMTS6Q9UKP5 1117 aa7.87□□□□□ -1.15
PTCD3-211ENST00000476215 PRR33A8MZF0 331 aa7.86□□□□□ -1.15
PTCD3-211ENST00000476215 CD96P40200 585 aa7.86□□□□□ -1.15
PTCD3-211ENST00000476215 SOX9P48436 509 aa7.86□□□□□ -1.15
PTCD3-211ENST00000476215 FBXW10Q5XX13 1052 aa7.86□□□□□ -1.15
PTCD3-211ENST00000476215 SLC23A3Q6PIS1 610 aa7.86□□□□□ -1.15
PTCD3-211ENST00000476215 MFSD4AQ8N468 514 aa7.86□□□□□ -1.15
PTCD3-211ENST00000476215 PPT2Q9UMR5 302 aa7.86□□□□□ -1.15
PTCD3-211ENST00000476215 ST14Q9Y5Y6 855 aa7.86□□□□□ -1.15
PTCD3-211ENST00000476215 PAPLNO95428 1278 aa7.85□□□□□ -1.15
PTCD3-211ENST00000476215 RNASE1P07998 156 aaKnown RBP7.85□□□□□ -1.15
PTCD3-211ENST00000476215 KIR3DL1P43629 444 aa7.85□□□□□ -1.15
PTCD3-211ENST00000476215 MLECQ14165 292 aa7.85□□□□□ -1.15
PTCD3-211ENST00000476215 CCDC81Q6ZN84 652 aa7.85□□□□□ -1.15
PTCD3-211ENST00000476215 THAP5Q7Z6K1 395 aa7.85□□□□□ -1.15
PTCD3-211ENST00000476215 ATG4DQ86TL0 474 aaPredicted RBP7.85□□□□□ -1.15
PTCD3-211ENST00000476215 PPP1R13LQ8WUF5 828 aa7.85□□□□□ -1.15
PTCD3-211ENST00000476215 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.85□□□□□ -1.152e-12■■□□□ 11.8
PTCD3-211ENST00000476215 EHMT1Q9H9B1 1298 aa7.85□□□□□ -1.15
PTCD3-211ENST00000476215 LMCD1Q9NZU5 365 aa7.85□□□□□ -1.15
PTCD3-211ENST00000476215 ATE1O95260 518 aa7.84□□□□□ -1.15
PTCD3-211ENST00000476215 KRTAP19-1Q8IUB9 90 aa7.84□□□□□ -1.15
PTCD3-211ENST00000476215 SLFN12Q8IYM2 578 aa7.84□□□□□ -1.15
PTCD3-211ENST00000476215 CPLX3Q8WVH0 158 aa7.84□□□□□ -1.15
PTCD3-211ENST00000476215 KLHL3Q9UH77 587 aa7.84□□□□□ -1.15
PTCD3-211ENST00000476215 TPX2Q9ULW0 747 aaKnown RBP7.84□□□□□ -1.15
PTCD3-211ENST00000476215 CYP7A1P22680 504 aa7.83□□□□□ -1.16
PTCD3-211ENST00000476215 ETV3P41162 512 aa7.83□□□□□ -1.16
PTCD3-211ENST00000476215 TXKP42681 527 aa7.83□□□□□ -1.16
PTCD3-211ENST00000476215 PIWIL2Q8TC59 973 aaKnown RBP7.83□□□□□ -1.16
PTCD3-211ENST00000476215 CYB5D2Q8WUJ1 264 aa7.83□□□□□ -1.16
PTCD3-211ENST00000476215 ASIC4Q96FT7 647 aa7.83□□□□□ -1.16
PTCD3-211ENST00000476215 GMLQ99445 158 aa7.83□□□□□ -1.16
PTCD3-211ENST00000476215 TANGO6Q9C0B7 1094 aa7.83□□□□□ -1.16
PTCD3-211ENST00000476215 ZNRF3Q9ULT6 936 aa7.83□□□□□ -1.16
PTCD3-211ENST00000476215 SSBP05455 408 aaKnown RBP eCLIP7.82□□□□□ -1.16
PTCD3-211ENST00000476215 IMPDH2P12268 514 aa7.82□□□□□ -1.16
PTCD3-211ENST00000476215 LRRN4CLQ8ND94 238 aa7.82□□□□□ -1.16
PTCD3-211ENST00000476215 FAM13CQ8NE31 585 aa7.82□□□□□ -1.16
PTCD3-211ENST00000476215 FLAD1Q8NFF5 587 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms