RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 TREML2Q5T2D2 321 aa13.81□□□□□ -0.2
HLA-DOB-208ENST00000475235 SWAP70Q9UH65 585 aa13.81□□□□□ -0.2
HLA-DOB-208ENST00000475235 FMNL1O95466 1100 aaPredicted RBP13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 MX1P20591 662 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 SHMT1P34896 483 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 GCLCP48506 637 aaPredicted RBP13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 GABPAQ06546 454 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 TSHZ3Q63HK5 1081 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 NBPF11Q86T75 865 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 ANP32BQ92688 251 aaKnown RBP13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 ARMC5Q96C12 935 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 ARHGAP39Q9C0H5 1083 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 SLC4A4Q9Y6R1 1079 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 FOCADQ5VW36 1801 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 SLFNL1Q499Z3 407 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 SLC9C1Q4G0N8 1177 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 ANKRD45Q5TZF3 282 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 PI4K2BQ8TCG2 481 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 APPBP2Q92624 585 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 PUS7LQ9H0K6 701 aaKnown RBP13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 PTCH2Q9Y6C5 1203 aa13.8□□□□□ -0.2
HLA-DOB-208ENST00000475235 SIPA1L1O43166 1804 aa13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 RNF113AO15541 343 aaKnown RBP13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 PRKAB2O43741 272 aa13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 HOXA7P31268 230 aaPredicted RBP13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 USP14P54578 494 aa13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 IRX3P78415 501 aaPredicted RBP13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 RAB3GAP1Q15042 981 aa13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 FAM110CQ1W6H9 321 aa13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 SHROOM1Q2M3G4 852 aaPredicted RBP13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 USP17L2Q6R6M4 530 aa13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 TRIM47Q96LD4 638 aa13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 FEZ1Q99689 392 aa13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 ASCC2Q9H1I8 757 aaPredicted RBP13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 RWDD1Q9H446 243 aaPredicted RBP13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 SRRDQ9UH36 339 aa13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 MYO5AQ9Y4I1 1855 aaKnown RBP13.79□□□□□ -0.2
HLA-DOB-208ENST00000475235 CHGBP05060 677 aa13.78□□□□□ -0.2
HLA-DOB-208ENST00000475235 GNAT2P19087 354 aa13.78□□□□□ -0.2
HLA-DOB-208ENST00000475235 HSP90AA2PQ14568 343 aaPredicted RBP13.78□□□□□ -0.2
HLA-DOB-208ENST00000475235 C12orf60Q5U649 245 aa13.78□□□□□ -0.2
HLA-DOB-208ENST00000475235 GIMAP6Q6P9H5 292 aa13.78□□□□□ -0.2
HLA-DOB-208ENST00000475235 ANKRD13CQ8N6S4 541 aa13.78□□□□□ -0.2
HLA-DOB-208ENST00000475235 C12orf42Q96LP6 360 aa13.78□□□□□ -0.2
HLA-DOB-208ENST00000475235 ARPP21Q9UBL0 812 aaPredicted RBP13.78□□□□□ -0.2
HLA-DOB-208ENST00000475235 MYPNQ86TC9 1320 aa13.77□□□□□ -0.2
HLA-DOB-208ENST00000475235 USP17L12C9JPN9 530 aa13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L21D6R901 530 aa13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 MPHOSPH10O00566 681 aaKnown RBP13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 CTGFP29279 349 aa13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 RAET1EQ8TD07 263 aa13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 OTUD7AQ8TE49 926 aaPredicted RBP13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 GTF3C2Q8WUA4 911 aaPredicted RBP13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 ZNF333Q96JL9 665 aa13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 STRBPQ96SI9 672 aaKnown RBP13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 FSD1Q9BTV5 496 aa13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 KIAA1683Q9H0B3 1180 aa13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 DDX60LQ5H9U9 1706 aaKnown RBP13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 SALL3Q9BXA9 1300 aa13.77□□□□□ -0.21
HLA-DOB-208ENST00000475235 TNPO2O14787 897 aaKnown RBP13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 ECM2O94769 699 aaPredicted RBP13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 CYP2D6P10635 497 aa13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 TMEM179Q6ZVK1 233 aa13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 OSBP2Q969R2 916 aa13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 CCDC17Q96LX7 622 aa13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 EMILIN3Q9NT22 766 aa13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 PRDM4Q9UKN5 801 aa13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 PHIPQ8WWQ0 1821 aa13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 CDK5RAP2Q96SN8 1893 aa13.76□□□□□ -0.21
HLA-DOB-208ENST00000475235 GPAA1O43292 621 aa13.75□□□□□ -0.21
HLA-DOB-208ENST00000475235 CTR9Q6PD62 1173 aa13.75□□□□□ -0.21
HLA-DOB-208ENST00000475235 SMC5Q8IY18 1101 aa13.75□□□□□ -0.21
HLA-DOB-208ENST00000475235 COA7Q96BR5 231 aa13.75□□□□□ -0.21
HLA-DOB-208ENST00000475235 TMEM106CQ9BVX2 250 aa13.75□□□□□ -0.21
HLA-DOB-208ENST00000475235 STAP2Q9UGK3 403 aa13.75□□□□□ -0.21
HLA-DOB-208ENST00000475235 LOC285556D6RIA3 1793 aa13.75□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L15C9J2P7 530 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L13C9JLJ4 530 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L11C9JVI0 530 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L18D6R9N7 530 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L22D6RA61 530 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L17D6RBQ6 530 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L19D6RCP7 530 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L20D6RJB6 530 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 GUCY1A2P33402 732 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 HERVK_113P62684 666 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 EVX2Q03828 476 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 PRKCZQ05513 592 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 USP17L24Q0WX57 530 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 SEPT2Q15019 361 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 SBK1Q52WX2 424 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 C16orf86Q6ZW13 317 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 SLC44A5Q8NCS7 719 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 SPDYE1Q8NFV5 336 aaPredicted RBP13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 EXOC6Q8TAG9 804 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 DYNLL2Q96FJ2 89 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 SH2D4AQ9H788 454 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 MORF4L1Q9UBU8 362 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 NAV1Q8NEY1 1877 aa13.74□□□□□ -0.21
HLA-DOB-208ENST00000475235 HTTP42858 3142 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms