RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TBX21Q9UL17 535 aa10.14□□□□□ -0.79
USP54-211ENST00000474929 IQSEC3Q9UPP2 1182 aaPredicted RBP10.14□□□□□ -0.79
USP54-211ENST00000474929 FAM50BQ9Y247 325 aa10.14□□□□□ -0.79
USP54-211ENST00000474929 TRANK1O15050 2925 aa10.14□□□□□ -0.79
USP54-211ENST00000474929 GBF1Q92538 1859 aa10.14□□□□□ -0.79
USP54-211ENST00000474929 USP34Q70CQ2 3546 aa10.13□□□□□ -0.79
USP54-211ENST00000474929 WDFY4Q6ZS81 3184 aa10.13□□□□□ -0.79
USP54-211ENST00000474929 MOXD2PA6NHM9 499 aa10.13□□□□□ -0.79
USP54-211ENST00000474929 TLR3O15455 904 aaKnown RBP10.13□□□□□ -0.79
USP54-211ENST00000474929 BACE1P56817 501 aa10.13□□□□□ -0.79
USP54-211ENST00000474929 ZNF365Q70YC5 407 aa10.13□□□□□ -0.79
USP54-211ENST00000474929 UPF3BQ9BZI7 483 aaKnown RBP10.13□□□□□ -0.79
USP54-211ENST00000474929 IL23AQ9NPF7 189 aa10.13□□□□□ -0.79
USP54-211ENST00000474929 STARD7Q9NQZ5 370 aa10.13□□□□□ -0.79
USP54-211ENST00000474929 MBIPQ9NS73 344 aa10.13□□□□□ -0.79
USP54-211ENST00000474929 GINM1Q9NU53 330 aa10.13□□□□□ -0.79
USP54-211ENST00000474929 YBX2Q9Y2T7 364 aaKnown RBP10.13□□□□□ -0.79
USP54-211ENST00000474929 CACNA1GO43497 2377 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 ZNF536O15090 1300 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 STRNO43815 780 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 FGBP02675 491 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 LDHBP07195 334 aaKnown RBP10.12□□□□□ -0.79
USP54-211ENST00000474929 ASNSP08243 561 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 CSF2RAP15509 400 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 CAP2P40123 477 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 MTMR2Q13614 643 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 FAM47AQ5JRC9 791 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 DPP9Q86TI2 863 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 CCDC84Q86UT8 332 aaPredicted RBP10.12□□□□□ -0.79
USP54-211ENST00000474929 ZGPATQ8N5A5 531 aaKnown RBP10.12□□□□□ -0.79
USP54-211ENST00000474929 TRPV1Q8NER1 839 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 CD320Q9NPF0 282 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 LMCD1Q9NZU5 365 aa10.12□□□□□ -0.79
USP54-211ENST00000474929 GAKO14976 1311 aa10.11□□□□□ -0.79
USP54-211ENST00000474929 NPM3O75607 178 aaKnown RBP10.11□□□□□ -0.79
USP54-211ENST00000474929 IGHA2P01877 340 aa10.11□□□□□ -0.79
USP54-211ENST00000474929 IFIT1P09914 478 aaKnown RBP10.11□□□□□ -0.79
USP54-211ENST00000474929 LEXMQ3ZCV2 418 aa10.11□□□□□ -0.79
USP54-211ENST00000474929 NCBP3Q53F19 620 aaKnown RBP10.11□□□□□ -0.79
USP54-211ENST00000474929 SAMD1Q6SPF0 538 aaPredicted RBP10.11□□□□□ -0.79
USP54-211ENST00000474929 LMBR1LQ6UX01 489 aa10.11□□□□□ -0.79
USP54-211ENST00000474929 HFE2Q6ZVN8 426 aa10.11□□□□□ -0.79
USP54-211ENST00000474929 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.11□□□□□ -0.79
USP54-211ENST00000474929 HERC5Q9UII4 1024 aaKnown RBP10.11□□□□□ -0.79
USP54-211ENST00000474929 SLC4A7Q9Y6M7 1214 aa10.11□□□□□ -0.79
USP54-211ENST00000474929 REV3LO60673 3130 aa10.11□□□□□ -0.79
USP54-211ENST00000474929 EPG5Q9HCE0 2579 aa10.11□□□□□ -0.79
USP54-211ENST00000474929 ELP1O95163 1332 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 SALL1Q9NSC2 1324 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 POTEB3A0JP26 581 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 DDTLA6NHG4 134 aaPredicted RBP10.1□□□□□ -0.79
USP54-211ENST00000474929 USP17L10C9JJH3 530 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 MAP4K4O95819 1239 aaPredicted RBP10.1□□□□□ -0.79
USP54-211ENST00000474929 GNAI1P63096 354 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 FOXO4P98177 505 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 DIXDC1Q155Q3 683 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 Q3C1V9 767 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 TMEM67Q5HYA8 995 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 POTEBQ6S5H4 581 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 C16orf59Q7L2K0 433 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 ZFPM1Q8IX07 1006 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 NPLOC4Q8TAT6 608 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 IFT57Q9NWB7 429 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 PRKAG3Q9UGI9 489 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 BRWD1Q9NSI6 2320 aa10.1□□□□□ -0.79
USP54-211ENST00000474929 PTPRZ1P23471 2315 aaPredicted RBP10.09□□□□□ -0.79
USP54-211ENST00000474929 PFKMP08237 780 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 ID4P47928 161 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 NEUROD2Q15784 382 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 METTL24Q5JXM2 366 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 ANO1Q5XXA6 986 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 LBX2Q6XYB7 198 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 SH3BP5LQ7L8J4 393 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 BMP8AQ7Z5Y6 402 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 SUGP1Q8IWZ8 645 aaKnown RBP10.09□□□□□ -0.79
USP54-211ENST00000474929 RPUSD2Q8IZ73 545 aaKnown RBP10.09□□□□□ -0.79
USP54-211ENST00000474929 PRSS33Q8NF86 280 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 DNAAF4Q8WXU2 420 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 GLT1D1Q96MS3 346 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 PHOX2BQ99453 314 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 UBE2ZQ9H832 354 aaPredicted RBP10.09□□□□□ -0.79
USP54-211ENST00000474929 C5orf42Q9H799 3197 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 CACNA1HO95180 2353 aa10.09□□□□□ -0.79
USP54-211ENST00000474929 PDE8BO95263 885 aa10.08□□□□□ -0.8
USP54-211ENST00000474929 AKR1A1P14550 325 aa10.08□□□□□ -0.8
USP54-211ENST00000474929 ATP2A2P16615 1042 aaKnown RBP10.08□□□□□ -0.8
USP54-211ENST00000474929 ADORA2AP29274 412 aa10.08□□□□□ -0.8
USP54-211ENST00000474929 PRDX5P30044 214 aa10.08□□□□□ -0.8
USP54-211ENST00000474929 PICALMQ13492 652 aa10.08□□□□□ -0.8
USP54-211ENST00000474929 PUM3Q15397 648 aaKnown RBP10.08□□□□□ -0.8
USP54-211ENST00000474929 ZNF594Q96JF6 807 aaPredicted RBP10.08□□□□□ -0.8
USP54-211ENST00000474929 POP1Q99575 1024 aaKnown RBP10.08□□□□□ -0.8
USP54-211ENST00000474929 GNL3LQ9NVN8 582 aaKnown RBP10.08□□□□□ -0.8
USP54-211ENST00000474929 TRIM35Q9UPQ4 493 aa10.08□□□□□ -0.8
USP54-211ENST00000474929 ZFHX2Q9C0A1 2572 aaPredicted RBP10.08□□□□□ -0.8
USP54-211ENST00000474929 KIF28PB7ZC32 967 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 USP17L15C9J2P7 530 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 USP17L13C9JLJ4 530 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 USP17L11C9JVI0 530 aa10.07□□□□□ -0.8
USP54-211ENST00000474929 USP17L18D6R9N7 530 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms