RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 WDR18Q9BV38 432 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 TBC1D2Q9BYX2 928 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 SWAP70Q9UH65 585 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 AGTPBP1Q9UPW5 1226 aa18.09■□□□□ 0.49
LIMS1-212ENST00000474038 BRCA2P51587 3418 aa18.08■□□□□ 0.49
LIMS1-212ENST00000474038 GREB1LQ9C091 1923 aaPredicted RBP18.08■□□□□ 0.49
LIMS1-212ENST00000474038 POTEFA5A3E0 1075 aa18.08■□□□□ 0.48
LIMS1-212ENST00000474038 MINDY4BA8MYZ0 360 aa18.08■□□□□ 0.48
LIMS1-212ENST00000474038 CDK8P49336 464 aa18.08■□□□□ 0.48
LIMS1-212ENST00000474038 HMGCS2P54868 508 aa18.08■□□□□ 0.48
LIMS1-212ENST00000474038 C16orf86Q6ZW13 317 aa18.08■□□□□ 0.48
LIMS1-212ENST00000474038 NACAP1Q9BZK3 213 aa18.08■□□□□ 0.48
LIMS1-212ENST00000474038 AS3MTQ9HBK9 375 aa18.08■□□□□ 0.48
LIMS1-212ENST00000474038 SLC45A1Q9Y2W3 748 aa18.08■□□□□ 0.48
LIMS1-212ENST00000474038 SLC9C1Q4G0N8 1177 aa18.07■□□□□ 0.48
LIMS1-212ENST00000474038 VPS53Q5VIR6 699 aa18.07■□□□□ 0.48
LIMS1-212ENST00000474038 ZNF589Q86UQ0 364 aaPredicted RBP18.07■□□□□ 0.48
LIMS1-212ENST00000474038 KIAA0100Q14667 2235 aaKnown RBP18.07■□□□□ 0.48
LIMS1-212ENST00000474038 ROBO3Q96MS0 1386 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 FMNL1O95466 1100 aaPredicted RBP18.06■□□□□ 0.48
LIMS1-212ENST00000474038 OSBPP22059 807 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 GUCY1A2P33402 732 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 SKAP1Q86WV1 359 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 PROCA1Q8NCQ7 364 aaPredicted RBP18.06■□□□□ 0.48
LIMS1-212ENST00000474038 SMCR8Q8TEV9 937 aaPredicted RBP18.06■□□□□ 0.48
LIMS1-212ENST00000474038 SH3TC2Q8TF17 1288 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 ZNF333Q96JL9 665 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 NAPBQ9H115 298 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 CABP5Q9NP86 173 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 DIAPH3Q9NSV4 1193 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 MYH4Q9Y623 1939 aa18.06■□□□□ 0.48
LIMS1-212ENST00000474038 CCDC171Q6TFL3 1326 aa18.05■□□□□ 0.48
LIMS1-212ENST00000474038 HIP1O00291 1037 aa18.05■□□□□ 0.48
LIMS1-212ENST00000474038 MPHOSPH10O00566 681 aaKnown RBP18.05■□□□□ 0.48
LIMS1-212ENST00000474038 MYCP01106 439 aaPredicted RBP18.05■□□□□ 0.48
LIMS1-212ENST00000474038 GNRH1P01148 92 aa18.05■□□□□ 0.48
LIMS1-212ENST00000474038 MTMR2Q13614 643 aa18.05■□□□□ 0.48
LIMS1-212ENST00000474038 SEPT2Q15019 361 aa18.05■□□□□ 0.48
LIMS1-212ENST00000474038 RAB3GAP1Q15042 981 aa18.05■□□□□ 0.48
LIMS1-212ENST00000474038 SH3D19Q5HYK7 790 aa18.05■□□□□ 0.48
LIMS1-212ENST00000474038 CWC27Q6UX04 472 aaKnown RBP18.05■□□□□ 0.48
LIMS1-212ENST00000474038 SRRDQ9UH36 339 aa18.05■□□□□ 0.48
LIMS1-212ENST00000474038 MGAMO43451 1857 aa18.05■□□□□ 0.48
LIMS1-212ENST00000474038 PDE4DIPQ5VU43 2346 aa18.04■□□□□ 0.48
LIMS1-212ENST00000474038 USP17L10C9JJH3 530 aa18.04■□□□□ 0.48
LIMS1-212ENST00000474038 AKR1B1P15121 316 aa18.04■□□□□ 0.48
LIMS1-212ENST00000474038 BACE1P56817 501 aa18.04■□□□□ 0.48
LIMS1-212ENST00000474038 STK11IPQ8N1F8 1099 aa18.04■□□□□ 0.48
LIMS1-212ENST00000474038 CCDC17Q96LX7 622 aa18.04■□□□□ 0.48
LIMS1-212ENST00000474038 LAMA4Q16363 1823 aa18.04■□□□□ 0.48
LIMS1-212ENST00000474038 MYPNQ86TC9 1320 aa18.03■□□□□ 0.48
LIMS1-212ENST00000474038 HSPD1P10809 573 aaKnown RBP18.03■□□□□ 0.48
LIMS1-212ENST00000474038 PRMT2P55345 433 aa18.03■□□□□ 0.48
LIMS1-212ENST00000474038 FCGRTP55899 365 aa18.03■□□□□ 0.48
LIMS1-212ENST00000474038 ALX1Q15699 326 aa18.03■□□□□ 0.48
LIMS1-212ENST00000474038 TMEM179Q6ZVK1 233 aa18.03■□□□□ 0.48
LIMS1-212ENST00000474038 NBPF11Q86T75 865 aa18.03■□□□□ 0.48
LIMS1-212ENST00000474038 ANKRD13CQ8N6S4 541 aa18.03■□□□□ 0.48
LIMS1-212ENST00000474038 ACER1Q8TDN7 264 aa18.03■□□□□ 0.48
LIMS1-212ENST00000474038 PNMA3Q9UL41 463 aa18.03■□□□□ 0.48
LIMS1-212ENST00000474038 RBBP6Q7Z6E9 1792 aaKnown RBP18.03■□□□□ 0.48
LIMS1-212ENST00000474038 MKI67P46013 3256 aaKnown RBP18.03■□□□□ 0.48
LIMS1-212ENST00000474038 C19orf81C9J6K1 198 aa18.02■□□□□ 0.48
LIMS1-212ENST00000474038 EN2P19622 333 aaPredicted RBP18.02■□□□□ 0.48
LIMS1-212ENST00000474038 RASA1P20936 1047 aa18.02■□□□□ 0.48
LIMS1-212ENST00000474038 HOXD10P28358 340 aa18.02■□□□□ 0.48
LIMS1-212ENST00000474038 MFAP1P55081 439 aaKnown RBP18.02■□□□□ 0.48
LIMS1-212ENST00000474038 PRKCZQ05513 592 aa18.02■□□□□ 0.48
LIMS1-212ENST00000474038 PPARAQ07869 468 aa18.02■□□□□ 0.48
LIMS1-212ENST00000474038 RAET1EQ8TD07 263 aa18.02■□□□□ 0.48
LIMS1-212ENST00000474038 ASCC2Q9H1I8 757 aaPredicted RBP18.02■□□□□ 0.48
LIMS1-212ENST00000474038 DOCK3Q8IZD9 2030 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 FGAP02671 866 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 PABPC4Q13310 644 aaKnown RBP eCLIP18.01■□□□□ 0.47
LIMS1-212ENST00000474038 ERICH6BQ5W0A0 696 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 CLEC10AQ8IUN9 316 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 FEZ1Q99689 392 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 TMEM106CQ9BVX2 250 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 MKNK2Q9HBH9 465 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 EMILIN3Q9NT22 766 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 TMOD4Q9NZQ9 345 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 GABRQQ9UN88 632 aa18.01■□□□□ 0.47
LIMS1-212ENST00000474038 ZMYM6O95789 1325 aa18■□□□□ 0.47
LIMS1-212ENST00000474038 CHMLP26374 656 aa18■□□□□ 0.47
LIMS1-212ENST00000474038 USP17L2Q6R6M4 530 aa18■□□□□ 0.47
LIMS1-212ENST00000474038 SIAH1Q8IUQ4 282 aa18■□□□□ 0.47
LIMS1-212ENST00000474038 GNL3Q9BVP2 549 aaKnown RBP eCLIP18■□□□□ 0.47
LIMS1-212ENST00000474038 KIAA1683Q9H0B3 1180 aa18■□□□□ 0.47
LIMS1-212ENST00000474038 IL25Q9H293 177 aa18■□□□□ 0.47
LIMS1-212ENST00000474038 A0A1W2PRG0 241 aa17.99■□□□□ 0.47
LIMS1-212ENST00000474038 TNPO2O14787 897 aaKnown RBP17.99■□□□□ 0.47
LIMS1-212ENST00000474038 PRDM1O75626 825 aa17.99■□□□□ 0.47
LIMS1-212ENST00000474038 SLC3A2P08195 630 aaKnown RBP17.99■□□□□ 0.47
LIMS1-212ENST00000474038 CTDSPL2Q05D32 466 aa17.99■□□□□ 0.47
LIMS1-212ENST00000474038 ZYXQ15942 572 aaKnown RBP17.99■□□□□ 0.47
LIMS1-212ENST00000474038 FAM110CQ1W6H9 321 aa17.99■□□□□ 0.47
LIMS1-212ENST00000474038 C12orf42Q96LP6 360 aa17.99■□□□□ 0.47
LIMS1-212ENST00000474038 ZNF287Q9HBT7 754 aa17.99■□□□□ 0.47
LIMS1-212ENST00000474038 PPP4R2Q9NY27 417 aa17.99■□□□□ 0.47
LIMS1-212ENST00000474038 ANAPC4Q9UJX5 808 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms