RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 OGDHLQ9ULD0 1010 aa16.42■□□□□ 0.22
CHD3-209ENST00000473376 IFIT2P09913 472 aaKnown RBP16.41■□□□□ 0.22
CHD3-209ENST00000473376 PDE6AP16499 860 aa16.41■□□□□ 0.22
CHD3-209ENST00000473376 RGS2P41220 211 aa16.41■□□□□ 0.22
CHD3-209ENST00000473376 CCAR1Q8IX12 1150 aaKnown RBP16.41■□□□□ 0.22
CHD3-209ENST00000473376 FEZ1Q99689 392 aa16.41■□□□□ 0.22
CHD3-209ENST00000473376 NBPF3Q9H094 633 aa16.41■□□□□ 0.22
CHD3-209ENST00000473376 SWAP70Q9UH65 585 aa16.41■□□□□ 0.22
CHD3-209ENST00000473376 DOCK3Q8IZD9 2030 aa16.41■□□□□ 0.22
CHD3-209ENST00000473376 POLR3DP05423 398 aaPredicted RBP16.4■□□□□ 0.22
CHD3-209ENST00000473376 SHMT1P34896 483 aa16.4■□□□□ 0.22
CHD3-209ENST00000473376 CHRDL2Q6WN34 429 aa16.4■□□□□ 0.22
CHD3-209ENST00000473376 PLEKHH3Q7Z736 793 aa16.4■□□□□ 0.22
CHD3-209ENST00000473376 TRIB2Q92519 343 aa16.4■□□□□ 0.22
CHD3-209ENST00000473376 ATP8A2Q9NTI2 1148 aa16.4■□□□□ 0.22
CHD3-209ENST00000473376 RBM27Q9P2N5 1060 aaKnown RBP16.4■□□□□ 0.22
CHD3-209ENST00000473376 TCRBV5S4A2TA0A5A2 114 aa16.39■□□□□ 0.21
CHD3-209ENST00000473376 HOXC6P09630 235 aa16.39■□□□□ 0.21
CHD3-209ENST00000473376 ATP5JP18859 108 aa16.39■□□□□ 0.21
CHD3-209ENST00000473376 PLCD1P51178 756 aa16.39■□□□□ 0.21
CHD3-209ENST00000473376 Q3C1V9 767 aa16.39■□□□□ 0.21
CHD3-209ENST00000473376 GPR142Q7Z601 462 aa16.39■□□□□ 0.21
CHD3-209ENST00000473376 SIRT2Q8IXJ6 389 aa16.39■□□□□ 0.21
CHD3-209ENST00000473376 PAWRQ96IZ0 340 aaKnown RBP16.39■□□□□ 0.21
CHD3-209ENST00000473376 APBA2Q99767 749 aa16.39■□□□□ 0.21
CHD3-209ENST00000473376 IL1RAPL2Q9NP60 686 aa16.39■□□□□ 0.21
CHD3-209ENST00000473376 SLC15A5A6NIM6 579 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 ZKSCAN1P17029 563 aaPredicted RBP16.38■□□□□ 0.21
CHD3-209ENST00000473376 VCAM1P19320 739 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 CYP2B6P20813 491 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 BMP8BP34820 402 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 MAP2K5Q13163 448 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 RAB3GAP1Q15042 981 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 SHROOM1Q2M3G4 852 aaPredicted RBP16.38■□□□□ 0.21
CHD3-209ENST00000473376 POTEEQ6S8J3 1075 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.38■□□□□ 0.211e-6■■■□□ 15.4
CHD3-209ENST00000473376 DCP1AQ9NPI6 582 aaPredicted RBP16.38■□□□□ 0.21
CHD3-209ENST00000473376 MCM9Q9NXL9 1143 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 HOXC10Q9NYD6 342 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 NDUFB9Q9Y6M9 179 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 ZNF532Q9HCE3 1301 aa16.38■□□□□ 0.21
CHD3-209ENST00000473376 MYO5AQ9Y4I1 1855 aaKnown RBP16.37■□□□□ 0.21
CHD3-209ENST00000473376 MYH1P12882 1939 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 STRNO43815 780 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 PRKAR2AP13861 404 aaKnown RBP16.37■□□□□ 0.21
CHD3-209ENST00000473376 GUCY1A2P33402 732 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 MNX1P50219 401 aaPredicted RBP16.37■□□□□ 0.21
CHD3-209ENST00000473376 UBE3CQ15386 1083 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 TMEM179Q6ZVK1 233 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 MB21D1Q8N884 522 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 LPAR1Q92633 364 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 CCDC17Q96LX7 622 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 HAUS7Q99871 368 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 PORCNQ9H237 461 aa16.37■□□□□ 0.21
CHD3-209ENST00000473376 GOLIM4O00461 696 aa16.36■□□□□ 0.21
CHD3-209ENST00000473376 MSCO60682 206 aa16.36■□□□□ 0.21
CHD3-209ENST00000473376 CNMDO75829 334 aa16.36■□□□□ 0.21
CHD3-209ENST00000473376 ADD2P35612 726 aa16.36■□□□□ 0.21
CHD3-209ENST00000473376 COG2Q14746 738 aa16.36■□□□□ 0.21
CHD3-209ENST00000473376 EDC3Q96F86 508 aaKnown RBP16.36■□□□□ 0.21
CHD3-209ENST00000473376 C11orf49Q9H6J7 331 aa16.36■□□□□ 0.21
CHD3-209ENST00000473376 SH2D4AQ9H788 454 aa16.36■□□□□ 0.21
CHD3-209ENST00000473376 PAG1Q9NWQ8 432 aa16.36■□□□□ 0.21
CHD3-209ENST00000473376 TRIOBPQ9H2D6 2365 aa16.36■□□□□ 0.21
CHD3-209ENST00000473376 PLXNB2O15031 1838 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 IGHA2P01877 340 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 PTPREP23469 700 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 CACNB2Q08289 660 aaPredicted RBP16.35■□□□□ 0.21
CHD3-209ENST00000473376 GRB14Q14449 540 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 ZSCAN25Q6NSZ9 544 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 GPR153Q6NV75 609 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 SHCBP1Q8NEM2 672 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 ACER1Q8TDN7 264 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 PAGR1Q9BTK6 254 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 RCAN3Q9UKA8 241 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 COG6Q9Y2V7 657 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 IVNS1ABPQ9Y6Y0 642 aa16.35■□□□□ 0.21
CHD3-209ENST00000473376 DDX60LQ5H9U9 1706 aaKnown RBP16.35■□□□□ 0.21
CHD3-209ENST00000473376 SPDYE16A6NNV3 312 aaPredicted RBP16.34■□□□□ 0.21
CHD3-209ENST00000473376 COL6A1P12109 1028 aa16.34■□□□□ 0.21
CHD3-209ENST00000473376 TRIM32Q13049 653 aa16.34■□□□□ 0.21
CHD3-209ENST00000473376 SEPT2Q15019 361 aa16.34■□□□□ 0.21
CHD3-209ENST00000473376 MFSD14CQ5VZR4 134 aa16.34■□□□□ 0.21
CHD3-209ENST00000473376 LHX8Q68G74 356 aa16.34■□□□□ 0.21
CHD3-209ENST00000473376 AMOTL1Q8IY63 956 aa16.34■□□□□ 0.21
CHD3-209ENST00000473376 ABRAQ8N0Z2 381 aa16.34■□□□□ 0.21
CHD3-209ENST00000473376 DDRGK1Q96HY6 314 aa16.34■□□□□ 0.21
CHD3-209ENST00000473376 DNAJC2Q99543 621 aaKnown RBP16.34■□□□□ 0.21
CHD3-209ENST00000473376 RPAP3Q9H6T3 665 aaPredicted RBP16.34■□□□□ 0.21
CHD3-209ENST00000473376 CWC22Q9HCG8 908 aaKnown RBP16.34■□□□□ 0.21
CHD3-209ENST00000473376 RANBP2P49792 3224 aaKnown RBP16.34■□□□□ 0.21
CHD3-209ENST00000473376 C12orf60Q5U649 245 aa16.33■□□□□ 0.2
CHD3-209ENST00000473376 LCORLQ8N3X6 602 aa16.33■□□□□ 0.2
CHD3-209ENST00000473376 DIS3LQ8TF46 1054 aaKnown RBP16.33■□□□□ 0.2
CHD3-209ENST00000473376 GDF15Q99988 308 aa16.33■□□□□ 0.2
CHD3-209ENST00000473376 LRRCC1Q9C099 1032 aa16.33■□□□□ 0.2
CHD3-209ENST00000473376 ARHGEF10LQ9HCE6 1279 aa16.33■□□□□ 0.2
CHD3-209ENST00000473376 TMX2Q9Y320 296 aa16.33■□□□□ 0.2
CHD3-209ENST00000473376 A0A1W2PRG0 241 aa16.32■□□□□ 0.2
CHD3-209ENST00000473376 ZYXQ15942 572 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms