RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 TMOD4Q9NZQ9 345 aa18.19■□□□□ 0.5
SDC3-203ENST00000471567 AGTPBP1Q9UPW5 1226 aa18.19■□□□□ 0.5
SDC3-203ENST00000471567 PTPRFP10586 1907 aa18.19■□□□□ 0.5
SDC3-203ENST00000471567 USP14P54578 494 aa18.18■□□□□ 0.5
SDC3-203ENST00000471567 USP17L2Q6R6M4 530 aa18.18■□□□□ 0.5
SDC3-203ENST00000471567 ZNF444Q8N0Y2 327 aaPredicted RBP18.18■□□□□ 0.5
SDC3-203ENST00000471567 KIAA1683Q9H0B3 1180 aa18.18■□□□□ 0.5
SDC3-203ENST00000471567 R3HDMLQ9H3Y0 253 aa18.18■□□□□ 0.5
SDC3-203ENST00000471567 KANSL2Q9H9L4 492 aa18.18■□□□□ 0.5
SDC3-203ENST00000471567 MYH8P13535 1937 aa18.17■□□□□ 0.5
SDC3-203ENST00000471567 TLR2O60603 784 aa18.17■□□□□ 0.5
SDC3-203ENST00000471567 PABPC4Q13310 644 aaKnown RBP eCLIP18.17■□□□□ 0.5
SDC3-203ENST00000471567 STK11IPQ8N1F8 1099 aa18.17■□□□□ 0.5
SDC3-203ENST00000471567 C12orf42Q96LP6 360 aa18.17■□□□□ 0.5
SDC3-203ENST00000471567 PARK7Q99497 189 aaKnown RBP18.17■□□□□ 0.5
SDC3-203ENST00000471567 FEZ1Q99689 392 aa18.17■□□□□ 0.5
SDC3-203ENST00000471567 SGSM2O43147 1006 aa18.16■□□□□ 0.5
SDC3-203ENST00000471567 FKTNO75072 461 aa18.16■□□□□ 0.5
SDC3-203ENST00000471567 FGRP09769 529 aa18.16■□□□□ 0.5
SDC3-203ENST00000471567 ICA1Q05084 483 aa18.16■□□□□ 0.5
SDC3-203ENST00000471567 ACER1Q8TDN7 264 aa18.16■□□□□ 0.5
SDC3-203ENST00000471567 ZNF296Q8WUU4 475 aaPredicted RBP18.16■□□□□ 0.5
SDC3-203ENST00000471567 ARHGEF10LQ9HCE6 1279 aa18.16■□□□□ 0.5
SDC3-203ENST00000471567 EMILIN3Q9NT22 766 aa18.16■□□□□ 0.5
SDC3-203ENST00000471567 CTNNA3Q9UI47 895 aa18.16■□□□□ 0.5
SDC3-203ENST00000471567 PNMA3Q9UL41 463 aa18.16■□□□□ 0.5
SDC3-203ENST00000471567 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.16■□□□□ 0.57e-6■■■□□ 18.9
SDC3-203ENST00000471567 ORC4O43929 436 aa18.15■□□□□ 0.5
SDC3-203ENST00000471567 PRDM1O75626 825 aa18.15■□□□□ 0.5
SDC3-203ENST00000471567 PCP11498 1178 aaKnown RBP18.15■□□□□ 0.5
SDC3-203ENST00000471567 HOXA7P31268 230 aaPredicted RBP18.15■□□□□ 0.5
SDC3-203ENST00000471567 CTDSPL2Q05D32 466 aa18.15■□□□□ 0.5
SDC3-203ENST00000471567 TREML2Q5T2D2 321 aa18.15■□□□□ 0.5
SDC3-203ENST00000471567 SIAH1Q8IUQ4 282 aa18.15■□□□□ 0.5
SDC3-203ENST00000471567 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.15■□□□□ 0.5
SDC3-203ENST00000471567 IL25Q9H293 177 aa18.15■□□□□ 0.5
SDC3-203ENST00000471567 SH2D4AQ9H788 454 aa18.15■□□□□ 0.5
SDC3-203ENST00000471567 LOC285556D6RIA3 1793 aa18.14■□□□□ 0.5
SDC3-203ENST00000471567 A0A1W2PRG0 241 aa18.14■□□□□ 0.49
SDC3-203ENST00000471567 ZNF213O14771 459 aa18.14■□□□□ 0.49
SDC3-203ENST00000471567 OSBPP22059 807 aa18.14■□□□□ 0.49
SDC3-203ENST00000471567 NEDD1Q8NHV4 660 aa18.14■□□□□ 0.49
SDC3-203ENST00000471567 TMX2Q9Y320 296 aa18.14■□□□□ 0.49
SDC3-203ENST00000471567 IGKV6D-41A0A0C4DH26 115 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 TSPY3P0CV98 308 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 TSPY8P0CW00 308 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 EEF2P13639 858 aaKnown RBP18.13■□□□□ 0.49
SDC3-203ENST00000471567 NT5C2P49902 561 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 SP3Q02447 781 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 DGKZQ13574 1117 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 COL13A1Q5TAT6 717 aaPredicted RBP18.13■□□□□ 0.49
SDC3-203ENST00000471567 C17orf99Q6UX52 265 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 RNF41Q9H4P4 317 aaPredicted RBP18.13■□□□□ 0.49
SDC3-203ENST00000471567 NYAP2Q9P242 653 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 ADGRA2Q96PE1 1338 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 PLIN4Q96Q06 1357 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 CASP8AP2Q9UKL3 1982 aa18.13■□□□□ 0.49
SDC3-203ENST00000471567 CYP2C8P10632 490 aa18.12■□□□□ 0.49
SDC3-203ENST00000471567 HAND2P61296 217 aa18.12■□□□□ 0.49
SDC3-203ENST00000471567 TFAP4Q01664 338 aa18.12■□□□□ 0.49
SDC3-203ENST00000471567 ZYXQ15942 572 aaKnown RBP18.12■□□□□ 0.49
SDC3-203ENST00000471567 IMMTQ16891 758 aaKnown RBP18.12■□□□□ 0.49
SDC3-203ENST00000471567 PPP4R3BQ5MIZ7 849 aa18.12■□□□□ 0.49
SDC3-203ENST00000471567 AKNAD1Q5T1N1 836 aa18.12■□□□□ 0.49
SDC3-203ENST00000471567 STAG1Q8WVM7 1258 aa18.12■□□□□ 0.49
SDC3-203ENST00000471567 ERO1AQ96HE7 468 aa18.12■□□□□ 0.49
SDC3-203ENST00000471567 TACC3Q9Y6A5 838 aa18.12■□□□□ 0.49
SDC3-203ENST00000471567 GREB1LQ9C091 1923 aaPredicted RBP18.11■□□□□ 0.49
SDC3-203ENST00000471567 IRX3P78415 501 aaPredicted RBP18.11■□□□□ 0.49
SDC3-203ENST00000471567 FAM47AQ5JRC9 791 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 CASC1Q6TDU7 716 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 MFSD6Q6ZSS7 791 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 CLEC10AQ8IUN9 316 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 SMCR8Q8TEV9 937 aaPredicted RBP18.11■□□□□ 0.49
SDC3-203ENST00000471567 LPAR1Q92633 364 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 ESYT1Q9BSJ8 1104 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 NBPF3Q9H094 633 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 ASCC2Q9H1I8 757 aaPredicted RBP18.11■□□□□ 0.49
SDC3-203ENST00000471567 VCPKMTQ9H867 229 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 INCENPQ9NQS7 918 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 MTMR4Q9NYA4 1195 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 SYNPO2Q9UMS6 1093 aa18.11■□□□□ 0.49
SDC3-203ENST00000471567 TSPY2A6NKD2 308 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 USP17L15C9J2P7 530 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 USP17L13C9JLJ4 530 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 USP17L11C9JVI0 530 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 USP17L18D6R9N7 530 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 USP17L22D6RA61 530 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 USP17L17D6RBQ6 530 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 USP17L19D6RCP7 530 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 USP17L20D6RJB6 530 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 RANBP6O60518 1105 aaKnown RBP18.1■□□□□ 0.49
SDC3-203ENST00000471567 CDC45O75419 566 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 BCRP11274 1271 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 VCAM1P19320 739 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 GCLCP48506 637 aaPredicted RBP18.1■□□□□ 0.49
SDC3-203ENST00000471567 ATP2B2Q01814 1243 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 PTH1RQ03431 593 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 USP17L24Q0WX57 530 aa18.1■□□□□ 0.49
SDC3-203ENST00000471567 KIAA1211Q6ZU35 1233 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms