RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 DTX1Q86Y01 620 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 GIPC2Q8TF65 315 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 GAL3ST3Q96A11 431 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 ISL2Q96A47 359 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 BCL2L13Q9BXK5 485 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 ATXN3LQ9H3M9 355 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 LRRC4CQ9HCJ2 640 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 LEMD3Q9Y2U8 911 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 TNS2Q63HR2 1409 aa6.58□□□□□ -1.36
VPS13A-210ENST00000471439 SYNGAP1Q96PV0 1343 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 LEFTY1O75610 366 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 FOSL1P15407 271 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 ERCC3P19447 782 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 RBM25P49756 843 aaKnown RBP6.57□□□□□ -1.36
VPS13A-210ENST00000471439 MAP3K11Q16584 847 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 C12orf40Q86WS4 652 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 SMYD4Q8IYR2 804 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-210ENST00000471439 THEMISQ8N1K5 641 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-210ENST00000471439 EMILIN2Q9BXX0 1053 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 CEP44Q9C0F1 390 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 TRPC5Q9UL62 973 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-210ENST00000471439 AK5Q9Y6K8 562 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 ZNF518AQ6AHZ1 1483 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 KIF14Q15058 1648 aa6.57□□□□□ -1.36
VPS13A-210ENST00000471439 AHDC1Q5TGY3 1603 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-210ENST00000471439 F6X3S4 739 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 TRIM37O94972 964 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 CTSHP09668 335 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 FAM87AP0C7U9 286 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 ZNF16P17020 682 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-210ENST00000471439 GRIK1P39086 918 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 INPP5AQ14642 412 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 DNAJC5GQ8N7S2 189 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 FAM181AQ8N9Y4 354 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 ANKRD24Q8TF21 1146 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 PSMG3-AS1Q96PY0 264 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 PCDHA4Q9UN74 947 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 UNC13BO14795 1591 aa6.56□□□□□ -1.36
VPS13A-210ENST00000471439 RBM47A0AV96 593 aaKnown RBP6.55□□□□□ -1.36
VPS13A-210ENST00000471439 CYP26A1O43174 497 aa6.55□□□□□ -1.36
VPS13A-210ENST00000471439 SEPT6Q14141 434 aa6.55□□□□□ -1.36
VPS13A-210ENST00000471439 COL19A1Q14993 1142 aa6.55□□□□□ -1.36
VPS13A-210ENST00000471439 CCDC85BQ15834 202 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-210ENST00000471439 TTBK2Q6IQ55 1244 aa6.55□□□□□ -1.36
VPS13A-210ENST00000471439 LRFN4Q6PJG9 635 aa6.55□□□□□ -1.36
VPS13A-210ENST00000471439 NPM2Q86SE8 214 aaKnown RBP6.55□□□□□ -1.36
VPS13A-210ENST00000471439 ZC3H7BQ9UGR2 993 aaKnown RBP6.55□□□□□ -1.36
VPS13A-210ENST00000471439 PCDHB5Q9Y5E4 795 aa6.55□□□□□ -1.36
VPS13A-210ENST00000471439 OAS3Q9Y6K5 1087 aaKnown RBP6.55□□□□□ -1.36
VPS13A-210ENST00000471439 ATRNO75882 1429 aa6.55□□□□□ -1.36
VPS13A-210ENST00000471439 SHANK3Q9BYB0 1731 aa6.55□□□□□ -1.36
VPS13A-210ENST00000471439 ATP7AQ04656 1500 aa6.55□□□□□ -1.36
VPS13A-210ENST00000471439 GP2P55259 537 aaKnown RBP6.54□□□□□ -1.36
VPS13A-210ENST00000471439 ERVK-24P63145 666 aa6.54□□□□□ -1.36
VPS13A-210ENST00000471439 DAB2P98082 770 aa6.54□□□□□ -1.36
VPS13A-210ENST00000471439 PSMD2Q13200 908 aa6.54□□□□□ -1.36
VPS13A-210ENST00000471439 INTS5Q6P9B9 1019 aaKnown RBP6.54□□□□□ -1.36
VPS13A-210ENST00000471439 RNF214Q8ND24 703 aa6.54□□□□□ -1.36
VPS13A-210ENST00000471439 UGGT1Q9NYU2 1555 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 PRAMEF27A3QJZ7 478 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 RING1Q06587 406 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 OGFOD3Q6PK18 319 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 TOP6BLQ8N6T0 577 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 GIMAP7Q8NHV1 300 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 PLPPR2Q96GM1 343 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 FRMD6Q96NE9 622 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 METTL22Q9BUU2 404 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-210ENST00000471439 SSU72Q9NP77 194 aaKnown RBP6.53□□□□□ -1.36
VPS13A-210ENST00000471439 SAMM50Q9Y512 469 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 MLH3Q9UHC1 1453 aa6.53□□□□□ -1.36
VPS13A-210ENST00000471439 TIAM1Q13009 1591 aa6.52□□□□□ -1.36
VPS13A-210ENST00000471439 FAM135AQ9P2D6 1515 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 ZBTB37Q5TC79 503 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 SV2BQ7L1I2 683 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS13A-210ENST00000471439 PLD6Q8N2A8 252 aaKnown RBP6.52□□□□□ -1.37
VPS13A-210ENST00000471439 DUSP23Q9BVJ7 150 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 FBRSQ9HAH7 460 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 SPON1Q9HCB6 807 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 KIAA1522Q9P206 1035 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-210ENST00000471439 CCDC39Q9UFE4 941 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 TLR6Q9Y2C9 796 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 TNRQ92752 1358 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 RALGAPBQ86X10 1494 aa6.52□□□□□ -1.37
VPS13A-210ENST00000471439 LIG3P49916 1009 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 LRRC14Q15048 493 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 CPSF6Q16630 551 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS13A-210ENST00000471439 WIPI1Q5MNZ9 446 aaPredicted RBP6.51□□□□□ -1.37
VPS13A-210ENST00000471439 DUSP27Q5VZP5 1158 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 ZNF574Q6ZN55 896 aaPredicted RBP6.51□□□□□ -1.37
VPS13A-210ENST00000471439 TMC4Q7Z404 712 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 WFDC3Q8IUB2 231 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 ELMO3Q96BJ8 720 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 PICK1Q9NRD5 415 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 PCOLCE2Q9UKZ9 415 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 CYP8B1Q9UNU6 501 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 MSH6P52701 1360 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 GOLGA3Q08378 1498 aa6.51□□□□□ -1.37
VPS13A-210ENST00000471439 SPHKAPQ2M3C7 1700 aa6.5□□□□□ -1.37
VPS13A-210ENST00000471439 KIDINS220Q9ULH0 1771 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms