RNA–Protein interactions for RNA: ENST00000468612.5

NEDD9-207, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 809 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-207ENST00000468612 EXOSC9Q06265 439 aaKnown RBP13.83□□□□□ -0.2
NEDD9-207ENST00000468612 EPHX3Q9H6B9 360 aa13.83□□□□□ -0.2
NEDD9-207ENST00000468612 PDS5AQ29RF7 1337 aaKnown RBP13.83□□□□□ -0.2
NEDD9-207ENST00000468612 MECOMQ03112 1051 aa13.82□□□□□ -0.2
NEDD9-207ENST00000468612 SHROOM1Q2M3G4 852 aaPredicted RBP13.82□□□□□ -0.2
NEDD9-207ENST00000468612 RASIP1Q5U651 963 aa13.82□□□□□ -0.2
NEDD9-207ENST00000468612 WDR78Q5VTH9 848 aa13.82□□□□□ -0.2
NEDD9-207ENST00000468612 OLFML2BQ68BL8 750 aa13.82□□□□□ -0.2
NEDD9-207ENST00000468612 ALYREFQ86V81 257 aaKnown RBP13.82□□□□□ -0.2
NEDD9-207ENST00000468612 SNX27Q96L92 541 aa13.82□□□□□ -0.2
NEDD9-207ENST00000468612 ABCF2Q9UG63 623 aa13.82□□□□□ -0.2
NEDD9-207ENST00000468612 PHF24Q9UPV7 400 aa13.82□□□□□ -0.2
NEDD9-207ENST00000468612 SIPA1L1O43166 1804 aa13.82□□□□□ -0.2
NEDD9-207ENST00000468612 PLXNA1Q9UIW2 1896 aa13.81□□□□□ -0.2
NEDD9-207ENST00000468612 MYCNP04198 464 aaPredicted RBP13.81□□□□□ -0.2
NEDD9-207ENST00000468612 IGFBP4P22692 258 aa13.81□□□□□ -0.2
NEDD9-207ENST00000468612 RASGRF1Q13972 1273 aa13.81□□□□□ -0.2
NEDD9-207ENST00000468612 TMEM31Q5JXX7 168 aa13.81□□□□□ -0.2
NEDD9-207ENST00000468612 SPTY2D1Q68D10 685 aaPredicted RBP13.81□□□□□ -0.2
NEDD9-207ENST00000468612 CCDC102BQ68D86 513 aa13.81□□□□□ -0.2
NEDD9-207ENST00000468612 METTL16Q86W50 562 aaKnown RBP13.81□□□□□ -0.2
NEDD9-207ENST00000468612 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.81□□□□□ -0.2
NEDD9-207ENST00000468612 DNAJC18Q9H819 358 aa13.81□□□□□ -0.2
NEDD9-207ENST00000468612 GINM1Q9NU53 330 aa13.81□□□□□ -0.2
NEDD9-207ENST00000468612 PI4KBQ9UBF8 816 aa13.81□□□□□ -0.2
NEDD9-207ENST00000468612 IVNS1ABPQ9Y6Y0 642 aa13.81□□□□□ -0.2
NEDD9-207ENST00000468612 TRANK1O15050 2925 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 GRXCR1A8MXD5 290 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 ADORA1P30542 326 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 FAM47AQ5JRC9 791 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L2Q6R6M4 530 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 LBX2Q6XYB7 198 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 C12orf42Q96LP6 360 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 TMEM39AQ9NV64 488 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 BTBD7Q9P203 1132 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 CEP126Q9P2H0 1117 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 ZNF236Q9UL36 1845 aa13.8□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L15C9J2P7 530 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L13C9JLJ4 530 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L11C9JVI0 530 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L18D6R9N7 530 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L22D6RA61 530 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L17D6RBQ6 530 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L19D6RCP7 530 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L20D6RJB6 530 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 PQBP1O60828 265 aaKnown RBP13.79□□□□□ -0.2
NEDD9-207ENST00000468612 CIAO1O76071 339 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 TFF2Q03403 129 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 FAAP100Q0VG06 881 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 USP17L24Q0WX57 530 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 NCBP3Q53F19 620 aaKnown RBP13.79□□□□□ -0.2
NEDD9-207ENST00000468612 TMEM240Q5SV17 173 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 CATSPERGQ6ZRH7 1159 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 CCDC129Q6ZRS4 1044 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 ERICH6Q7L0X2 663 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 C16orf59Q7L2K0 433 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 ANKRD33Q7Z3H0 272 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 TSPYL2Q9H2G4 693 aaPredicted RBP13.79□□□□□ -0.2
NEDD9-207ENST00000468612 C11orf16Q9NQ32 467 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 FBXO3Q9UK99 471 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 ZBTB21Q9ULJ3 1066 aa13.79□□□□□ -0.2
NEDD9-207ENST00000468612 GPR37L1O60883 481 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 GDF11O95390 407 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 ADORA2AP29274 412 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 KCNQ1P51787 676 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 AAK1Q2M2I8 961 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 PRAMEF19Q5SWL8 479 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 DPP9Q86TI2 863 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 TEX11Q8IYF3 940 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 SLC44A5Q8NCS7 719 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 TOX2Q96NM4 488 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 USP44Q9H0E7 712 aa13.78□□□□□ -0.2
NEDD9-207ENST00000468612 DHX36Q9H2U1 1008 aaKnown RBP13.78□□□□□ -0.2
NEDD9-207ENST00000468612 A0A1W2PQ45 241 aaPredicted RBP13.77□□□□□ -0.21
NEDD9-207ENST00000468612 A0A1W2PQY0 241 aa13.77□□□□□ -0.21
NEDD9-207ENST00000468612 TIMP1P01033 207 aa13.77□□□□□ -0.21
NEDD9-207ENST00000468612 DDX10Q13206 875 aaKnown RBP13.77□□□□□ -0.21
NEDD9-207ENST00000468612 NSUN4Q96CB9 384 aaKnown RBP13.77□□□□□ -0.21
NEDD9-207ENST00000468612 SIL1Q9H173 461 aa13.77□□□□□ -0.21
NEDD9-207ENST00000468612 PRKRIP1Q9H875 184 aaPredicted RBP13.77□□□□□ -0.21
NEDD9-207ENST00000468612 SPDYE16A6NNV3 312 aaPredicted RBP13.76□□□□□ -0.21
NEDD9-207ENST00000468612 ERC2O15083 957 aa13.76□□□□□ -0.21
NEDD9-207ENST00000468612 STRNO43815 780 aa13.76□□□□□ -0.21
NEDD9-207ENST00000468612 COBLO75128 1261 aa13.76□□□□□ -0.21
NEDD9-207ENST00000468612 LDHCP07864 332 aa13.76□□□□□ -0.21
NEDD9-207ENST00000468612 GSTO1P78417 241 aa13.76□□□□□ -0.21
NEDD9-207ENST00000468612 PPIGQ13427 754 aaKnown RBP eCLIP13.76□□□□□ -0.21
NEDD9-207ENST00000468612 RAB30Q15771 203 aa13.76□□□□□ -0.21
NEDD9-207ENST00000468612 MFSD5Q6N075 450 aa13.76□□□□□ -0.21
NEDD9-207ENST00000468612 FOXP4Q8IVH2 680 aaPredicted RBP13.76□□□□□ -0.21
NEDD9-207ENST00000468612 SH3RF3Q8TEJ3 882 aaPredicted RBP13.76□□□□□ -0.21
NEDD9-207ENST00000468612 MSRAQ9UJ68 235 aa13.76□□□□□ -0.21
NEDD9-207ENST00000468612 TBX21Q9UL17 535 aa13.76□□□□□ -0.21
NEDD9-207ENST00000468612 DCDC2CA8MYV0 355 aa13.75□□□□□ -0.21
NEDD9-207ENST00000468612 ZYXQ15942 572 aaKnown RBP13.75□□□□□ -0.21
NEDD9-207ENST00000468612 CCDC174Q6PII3 467 aa13.75□□□□□ -0.21
NEDD9-207ENST00000468612 WDR63Q8IWG1 891 aa13.75□□□□□ -0.21
NEDD9-207ENST00000468612 KHSRPQ92945 711 aaKnown RBP eCLIP13.75□□□□□ -0.21
NEDD9-207ENST00000468612 NKX2-4Q9H2Z4 354 aa13.75□□□□□ -0.21
NEDD9-207ENST00000468612 XPNPEP3Q9NQH7 507 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms