RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 USP6NLQ92738 828 aa14.46□□□□□ -0.09
PTPRF-211ENST00000467464 DYNLL2Q96FJ2 89 aa14.46□□□□□ -0.09
PTPRF-211ENST00000467464 PUS7LQ9H0K6 701 aaKnown RBP14.46□□□□□ -0.09
PTPRF-211ENST00000467464 PORCNQ9H237 461 aa14.46□□□□□ -0.09
PTPRF-211ENST00000467464 PAK6Q9NQU5 681 aaPredicted RBP14.46□□□□□ -0.09
PTPRF-211ENST00000467464 ECHDC1Q9NTX5 307 aa14.46□□□□□ -0.09
PTPRF-211ENST00000467464 BIN2Q9UBW5 565 aaPredicted RBP14.46□□□□□ -0.09
PTPRF-211ENST00000467464 MYH1P12882 1939 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 CYP2D7A0A087X1C5 515 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 ERVK-9P63128 1117 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 ERVK-24P63145 666 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 TRIM32Q13049 653 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 C12orf60Q5U649 245 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 CATSPERGQ6ZRH7 1159 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 SIAH1Q8IUQ4 282 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 NKX2-3Q8TAU0 364 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.45□□□□□ -0.1
PTPRF-211ENST00000467464 TAOK2Q9UL54 1235 aa14.45□□□□□ -0.1
PTPRF-211ENST00000467464 KIAA0100Q14667 2235 aaKnown RBP14.45□□□□□ -0.1
PTPRF-211ENST00000467464 PLXNB2O15031 1838 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L15C9J2P7 530 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L13C9JLJ4 530 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L11C9JVI0 530 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L18D6R9N7 530 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L22D6RA61 530 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L17D6RBQ6 530 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L19D6RCP7 530 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L20D6RJB6 530 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 SGPL1O95470 568 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP14P54578 494 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 RRP1P56182 461 aaKnown RBP14.44□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L24Q0WX57 530 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 KIAA1755Q5JYT7 1200 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 LBX2Q6XYB7 198 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 CLEC10AQ8IUN9 316 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 GPRC5AQ8NFJ5 357 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 GTF3C2Q8WUA4 911 aaPredicted RBP14.44□□□□□ -0.1
PTPRF-211ENST00000467464 FEZ1Q99689 392 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 CRISPLD2Q9H0B8 497 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 CABP5Q9NP86 173 aa14.44□□□□□ -0.1
PTPRF-211ENST00000467464 SPDYE16A6NNV3 312 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-211ENST00000467464 HMGCRP04035 888 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 AKR1B1P15121 316 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 MORN1Q5T089 497 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 MAP3K21Q5TCX8 1036 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 KBTBD3Q8NAB2 608 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 TRIB2Q92519 343 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 OSBP2Q969R2 916 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 BTBD7Q9P203 1132 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 SWAP70Q9UH65 585 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 RABGAP1Q9Y3P9 1069 aa14.43□□□□□ -0.1
PTPRF-211ENST00000467464 SALL3Q9BXA9 1300 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L12C9JPN9 530 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 USP17L21D6R901 530 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 MAPK4P31152 587 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 CDK8P49336 464 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 ZSCAN25Q6NSZ9 544 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 CTR9Q6PD62 1173 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 TMEM179Q6ZVK1 233 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 C16orf86Q6ZW13 317 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 GPR142Q7Z601 462 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 PI4K2BQ8TCG2 481 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 OTUD7AQ8TE49 926 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-211ENST00000467464 DEFB118Q96PH6 123 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 STRBPQ96SI9 672 aaKnown RBP14.42□□□□□ -0.1
PTPRF-211ENST00000467464 PAGR1Q9BTK6 254 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.42□□□□□ -0.1
PTPRF-211ENST00000467464 RPAP3Q9H6T3 665 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-211ENST00000467464 SLC4A4Q9Y6R1 1079 aa14.42□□□□□ -0.1
PTPRF-211ENST00000467464 FARP2O94887 1054 aaPredicted RBP14.41□□□□□ -0.1
PTPRF-211ENST00000467464 XRCC5P13010 732 aaKnown RBP14.41□□□□□ -0.1
PTPRF-211ENST00000467464 SOCS4Q8WXH5 440 aa14.41□□□□□ -0.1
PTPRF-211ENST00000467464 NUDT12Q9BQG2 462 aa14.41□□□□□ -0.1
PTPRF-211ENST00000467464 ROBO3Q96MS0 1386 aa14.4□□□□□ -0.1
PTPRF-211ENST00000467464 GSG1L2A8MUP6 293 aa14.4□□□□□ -0.1
PTPRF-211ENST00000467464 H0YGN5 161 aa14.4□□□□□ -0.1
PTPRF-211ENST00000467464 MPHOSPH10O00566 681 aaKnown RBP14.4□□□□□ -0.1
PTPRF-211ENST00000467464 CYP2B6P20813 491 aa14.4□□□□□ -0.1
PTPRF-211ENST00000467464 MNX1P50219 401 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-211ENST00000467464 PLEKHH3Q7Z736 793 aa14.4□□□□□ -0.1
PTPRF-211ENST00000467464 APPBP2Q92624 585 aa14.4□□□□□ -0.1
PTPRF-211ENST00000467464 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.4□□□□□ -0.1
PTPRF-211ENST00000467464 EPB41L4AQ9HCS5 686 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-211ENST00000467464 TMX2Q9Y320 296 aa14.4□□□□□ -0.1
PTPRF-211ENST00000467464 A0A0G2JMZ2 1700 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 RNF113AO15541 343 aaKnown RBP14.39□□□□□ -0.11
PTPRF-211ENST00000467464 IGHA2P01877 340 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 ICA1Q05084 483 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 CCL14Q16627 93 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 SBK1Q52WX2 424 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 HABP4Q5JVS0 413 aaKnown RBP14.39□□□□□ -0.11
PTPRF-211ENST00000467464 DIS3LQ8TF46 1054 aaKnown RBP14.39□□□□□ -0.11
PTPRF-211ENST00000467464 GCC1Q96CN9 775 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 CCDC17Q96LX7 622 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 CRBNQ96SW2 442 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 TTC41PQ6P2S7 1318 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 RPTORQ8N122 1335 aa14.39□□□□□ -0.11
PTPRF-211ENST00000467464 M0R2C6 588 aa14.38□□□□□ -0.11
PTPRF-211ENST00000467464 CAPN2P17655 700 aa14.38□□□□□ -0.11
PTPRF-211ENST00000467464 GIMAP6Q6P9H5 292 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms