RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 MCM9Q9NXL9 1143 aa23.2■■□□□ 1.3
COL9A3-206ENST00000466532 FRMPD3Q5JV73 1810 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 MAPK4P31152 587 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 USP14P54578 494 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 Q3C1V9 767 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 CCAR1Q8IX12 1150 aaKnown RBP23.19■■□□□ 1.3
COL9A3-206ENST00000466532 LCORLQ8N3X6 602 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 SOCS4Q8WXH5 440 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 TRIB2Q92519 343 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 NUDT12Q9BQG2 462 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 KIAA1683Q9H0B3 1180 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 PAG1Q9NWQ8 432 aa23.19■■□□□ 1.3
COL9A3-206ENST00000466532 RPTORQ8N122 1335 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 USP17L15C9J2P7 530 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 USP17L13C9JLJ4 530 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 USP17L11C9JVI0 530 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 USP17L18D6R9N7 530 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 USP17L22D6RA61 530 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 USP17L17D6RBQ6 530 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 USP17L19D6RCP7 530 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 USP17L20D6RJB6 530 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 FXR1P51114 621 aaKnown RBP eCLIP23.18■■□□□ 1.3
COL9A3-206ENST00000466532 USP17L24Q0WX57 530 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 PDE3AQ14432 1141 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 CHRDL2Q6WN34 429 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 ACER1Q8TDN7 264 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 SDR42E1Q8WUS8 393 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 PORCNQ9H237 461 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 BOLA2Q9H3K6 86 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 HMX1Q9NP08 348 aaPredicted RBP23.18■■□□□ 1.3
COL9A3-206ENST00000466532 NR2E3Q9Y5X4 410 aa23.18■■□□□ 1.3
COL9A3-206ENST00000466532 VCAM1P19320 739 aa23.17■■□□□ 1.3
COL9A3-206ENST00000466532 EVX2Q03828 476 aa23.17■■□□□ 1.3
COL9A3-206ENST00000466532 GABPAQ06546 454 aa23.17■■□□□ 1.3
COL9A3-206ENST00000466532 POTEEQ6S8J3 1075 aa23.17■■□□□ 1.3
COL9A3-206ENST00000466532 PARP14Q460N5 1801 aa23.17■■□□□ 1.3
COL9A3-206ENST00000466532 TRIOBPQ9H2D6 2365 aa23.16■■□□□ 1.3
COL9A3-206ENST00000466532 RLFQ13129 1914 aa23.16■■□□□ 1.3
COL9A3-206ENST00000466532 ATP5JP18859 108 aa23.16■■□□□ 1.3
COL9A3-206ENST00000466532 GUCY1A2P33402 732 aa23.16■■□□□ 1.3
COL9A3-206ENST00000466532 SEPT2Q15019 361 aa23.16■■□□□ 1.3
COL9A3-206ENST00000466532 CATSPERGQ6ZRH7 1159 aa23.16■■□□□ 1.3
COL9A3-206ENST00000466532 GPR142Q7Z601 462 aa23.16■■□□□ 1.3
COL9A3-206ENST00000466532 PAWRQ96IZ0 340 aaKnown RBP23.16■■□□□ 1.3
COL9A3-206ENST00000466532 ARMT1Q9H993 441 aa23.16■■□□□ 1.3
COL9A3-206ENST00000466532 DCP1AQ9NPI6 582 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-206ENST00000466532 RABGAP1Q9Y3P9 1069 aa23.16■■□□□ 1.3
COL9A3-206ENST00000466532 MPHOSPH10O00566 681 aaKnown RBP23.15■■□□□ 1.3
COL9A3-206ENST00000466532 XRCC5P13010 732 aaKnown RBP23.15■■□□□ 1.3
COL9A3-206ENST00000466532 ADD2P35612 726 aa23.15■■□□□ 1.3
COL9A3-206ENST00000466532 C20orf194Q5TEA3 1177 aa23.15■■□□□ 1.3
COL9A3-206ENST00000466532 PLEKHH3Q7Z736 793 aa23.15■■□□□ 1.3
COL9A3-206ENST00000466532 CWC22Q9HCG8 908 aaKnown RBP23.15■■□□□ 1.3
COL9A3-206ENST00000466532 EVI5O60447 810 aa23.14■■□□□ 1.29
COL9A3-206ENST00000466532 CNMDO75829 334 aa23.14■■□□□ 1.29
COL9A3-206ENST00000466532 CYP2D6P10635 497 aa23.14■■□□□ 1.29
COL9A3-206ENST00000466532 RGS2P41220 211 aa23.14■■□□□ 1.29
COL9A3-206ENST00000466532 SLFNL1Q499Z3 407 aa23.14■■□□□ 1.29
COL9A3-206ENST00000466532 NECAB2Q7Z6G3 386 aa23.14■■□□□ 1.29
COL9A3-206ENST00000466532 TRMT44Q8IYL2 757 aaKnown RBP23.14■■□□□ 1.29
COL9A3-206ENST00000466532 ANKLE1Q8NAG6 615 aa23.14■■□□□ 1.29
COL9A3-206ENST00000466532 DIS3LQ8TF46 1054 aaKnown RBP23.14■■□□□ 1.29
COL9A3-206ENST00000466532 HAUS7Q99871 368 aa23.14■■□□□ 1.29
COL9A3-206ENST00000466532 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.14■■□□□ 1.29
COL9A3-206ENST00000466532 A0A0G2JMZ2 1700 aa23.13■■□□□ 1.29
COL9A3-206ENST00000466532 MBD4O95243 580 aa23.13■■□□□ 1.29
COL9A3-206ENST00000466532 PRKAR2AP13861 404 aaKnown RBP23.13■■□□□ 1.29
COL9A3-206ENST00000466532 ZKSCAN1P17029 563 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-206ENST00000466532 CCNA1P78396 465 aa23.13■■□□□ 1.29
COL9A3-206ENST00000466532 MORN1Q5T089 497 aa23.13■■□□□ 1.29
COL9A3-206ENST00000466532 MAP3K21Q5TCX8 1036 aa23.13■■□□□ 1.29
COL9A3-206ENST00000466532 USP6NLQ92738 828 aa23.13■■□□□ 1.29
COL9A3-206ENST00000466532 LRRCC1Q9C099 1032 aa23.13■■□□□ 1.29
COL9A3-206ENST00000466532 RPAP3Q9H6T3 665 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-206ENST00000466532 PRKAB2O43741 272 aa23.12■■□□□ 1.29
COL9A3-206ENST00000466532 SLC44A5Q8NCS7 719 aa23.12■■□□□ 1.29
COL9A3-206ENST00000466532 RBM27Q9P2N5 1060 aaKnown RBP23.12■■□□□ 1.29
COL9A3-206ENST00000466532 SWAP70Q9UH65 585 aa23.12■■□□□ 1.29
COL9A3-206ENST00000466532 COL11A1P12107 1806 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-206ENST00000466532 CCL14Q16627 93 aa23.11■■□□□ 1.29
COL9A3-206ENST00000466532 WDR78Q5VTH9 848 aa23.11■■□□□ 1.29
COL9A3-206ENST00000466532 LBX2Q6XYB7 198 aa23.11■■□□□ 1.29
COL9A3-206ENST00000466532 DYNLL2Q96FJ2 89 aa23.11■■□□□ 1.29
COL9A3-206ENST00000466532 APBA2Q99767 749 aa23.11■■□□□ 1.29
COL9A3-206ENST00000466532 ATP8A2Q9NTI2 1148 aa23.11■■□□□ 1.29
COL9A3-206ENST00000466532 ZNFX1Q9P2E3 1918 aaKnown RBP23.11■■□□□ 1.29
COL9A3-206ENST00000466532 A0A1W2PRG0 241 aa23.1■■□□□ 1.29
COL9A3-206ENST00000466532 SPDYE16A6NNV3 312 aaPredicted RBP23.1■■□□□ 1.29
COL9A3-206ENST00000466532 SMARCA5O60264 1052 aaPredicted RBP23.1■■□□□ 1.29
COL9A3-206ENST00000466532 GLRX3O76003 335 aaKnown RBP23.1■■□□□ 1.29
COL9A3-206ENST00000466532 CHGBP05060 677 aa23.1■■□□□ 1.29
COL9A3-206ENST00000466532 MAP2K5Q13163 448 aa23.1■■□□□ 1.29
COL9A3-206ENST00000466532 TMEM179Q6ZVK1 233 aa23.1■■□□□ 1.29
COL9A3-206ENST00000466532 BTBD7Q9P203 1132 aa23.1■■□□□ 1.29
COL9A3-206ENST00000466532 CACNB2Q08289 660 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-206ENST00000466532 UBE3CQ15386 1083 aa23.09■■□□□ 1.29
COL9A3-206ENST00000466532 NBPF3Q9H094 633 aa23.09■■□□□ 1.29
COL9A3-206ENST00000466532 OGDHLQ9ULD0 1010 aa23.09■■□□□ 1.29
COL9A3-206ENST00000466532 ZNF236Q9UL36 1845 aa23.09■■□□□ 1.29
COL9A3-206ENST00000466532 ZSCAN25Q6NSZ9 544 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms