RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MAP4K4O95819 1239 aaPredicted RBP14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 IFIT2P09913 472 aaKnown RBP14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 MAPK4P31152 587 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 RGS2P41220 211 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 GSTO1P78417 241 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 GRIN2CQ14957 1233 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 TTC39AQ5SRH9 613 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 GPRC5AQ8NFJ5 357 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 BADQ92934 168 aa14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 ZNF512BQ96KM6 892 aaPredicted RBP14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 OSBPL5Q9H0X9 879 aaPredicted RBP14.46□□□□□ -0.09
SQSTM1-206ENST00000466342 DNM1LO00429 736 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 IGHDP01880 384 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 MCAMP43121 646 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 MORN1Q5T089 497 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 PI16Q6UXB8 463 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 SMC5Q8IY18 1101 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 LPAR1Q92633 364 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 NSUN4Q96CB9 384 aaKnown RBP14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 ASB2Q96Q27 587 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 P2RX7Q99572 595 aaKnown RBP14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 ATP11BQ9Y2G3 1177 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 ARIH1Q9Y4X5 557 aaPredicted RBP14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 TCF20Q9UGU0 1960 aaKnown RBP14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 MYH7P12883 1935 aa14.45□□□□□ -0.1
SQSTM1-206ENST00000466342 SYNGAP1Q96PV0 1343 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 MSCO60682 206 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 NPM3O75607 178 aaKnown RBP14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 HOXA7P31268 230 aaPredicted RBP14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 BTDP43251 543 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 IRX3P78415 501 aaPredicted RBP14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 SLC39A5Q6ZMH5 540 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 TBC1D9Q6ZT07 1266 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 GPR142Q7Z601 462 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 CCAR1Q8IX12 1150 aaKnown RBP14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 ADAMTS19Q8TE59 1207 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 ZNF384Q8TF68 577 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 APBA2Q99767 749 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 BCL11AQ9H165 835 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 TXNRD2Q9NNW7 524 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 DDX4Q9NQI0 724 aaKnown RBP14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 RAI14Q9P0K7 980 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 LRP2BPQ9P2M1 347 aa14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 DDX20Q9UHI6 824 aaKnown RBP14.44□□□□□ -0.1
SQSTM1-206ENST00000466342 USP17L5A8MUK1 530 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 PEX10O60683 326 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 NEFLP07196 543 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 RHBDL3P58872 404 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 HERVK_113P62684 666 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 Q3C1V9 767 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 MFSD14CQ5VZR4 134 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 PLEKHH3Q7Z736 793 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 PRDM5Q9NQX1 630 aaPredicted RBP14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 RBPJLQ9UBG7 517 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 RFX7Q2KHR2 1363 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 BDP1A6H8Y1 2624 aa14.43□□□□□ -0.1
SQSTM1-206ENST00000466342 CAP2P40123 477 aa14.42□□□□□ -0.1
SQSTM1-206ENST00000466342 PICALMQ13492 652 aa14.42□□□□□ -0.1
SQSTM1-206ENST00000466342 ANKRD45Q5TZF3 282 aa14.42□□□□□ -0.1
SQSTM1-206ENST00000466342 EDC3Q96F86 508 aaKnown RBP14.42□□□□□ -0.1
SQSTM1-206ENST00000466342 UHRF1Q96T88 793 aaPredicted RBP14.42□□□□□ -0.1
SQSTM1-206ENST00000466342 C1QTNF1Q9BXJ1 281 aa14.42□□□□□ -0.1
SQSTM1-206ENST00000466342 PORCNQ9H237 461 aa14.42□□□□□ -0.1
SQSTM1-206ENST00000466342 AS3MTQ9HBK9 375 aa14.42□□□□□ -0.1
SQSTM1-206ENST00000466342 ZBTB47Q9UFB7 747 aaPredicted RBP14.42□□□□□ -0.1
SQSTM1-206ENST00000466342 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 FAM196BA6NMK8 535 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 CNGA1P29973 690 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 ERVK-9P63128 1117 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 ERVK-24P63145 666 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 MRPS5P82675 430 aaKnown RBP14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 MAP2K5Q13163 448 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 PPM1EQ8WY54 764 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 RNPC3Q96LT9 517 aaKnown RBP14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 NOL10Q9BSC4 688 aaKnown RBP14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 ZNF576Q9H609 170 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 PDLIM7Q9NR12 457 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 SNRKQ9NRH2 765 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 THEGQ9P2T0 379 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 PLXNA1Q9UIW2 1896 aa14.41□□□□□ -0.1
SQSTM1-206ENST00000466342 TRIM43BA6NCK2 446 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 BAG3O95817 575 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 CYP2E1P05181 493 aaPredicted RBP14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 DNAJB2P25686 324 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 ZAP70P43403 619 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 GJC2Q5T442 439 aaPredicted RBP14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 NAA16Q6N069 864 aaPredicted RBP14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 SH3RF1Q7Z6J0 888 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 ARRDC4Q8NCT1 418 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 TRIM43Q96BQ3 446 aaPredicted RBP14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 GPATCH3Q96I76 525 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 GAS2L1Q99501 681 aaPredicted RBP14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 WDR18Q9BV38 432 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 TMOD4Q9NZQ9 345 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 FLRT1Q9NZU1 646 aa14.4□□□□□ -0.1
SQSTM1-206ENST00000466342 PLCG2P16885 1265 aa14.39□□□□□ -0.11
SQSTM1-206ENST00000466342 ATP5JP18859 108 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms