RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 KDM6BO15054 1643 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 GNA14O95837 355 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 DNM2P50570 870 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 KCNJ18B7U540 433 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 BUB1BO60566 1050 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 KCNJ12Q14500 433 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 CACNA2D3Q8IZS8 1091 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 EAF2Q96CJ1 260 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 CCNT1O60563 726 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 PPP2R5EQ16537 467 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 SRGAP1Q7Z6B7 1085 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 GPIHBP1Q8IV16 184 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 CABLES1Q8TDN4 633 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 CCDC97Q96F63 343 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 TCP1P17987 556 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 CLNS1AP54105 237 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 AKNAD1Q5T1N1 836 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 PARP2Q9UGN5 583 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 CDC23Q9UJX2 597 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 H7C1D1 291 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 SPOPO43791 374 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 CEP104O60308 925 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 CLEC11AQ9Y240 323 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 F8W031 263 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 NDC80O14777 642 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 PPP6R2O75170 966 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 NDUFA8P51970 172 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 MYL10Q9BUA6 226 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 RAB17Q9H0T7 212 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 KCNJ14Q9UNX9 436 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 MROH5Q6ZUA9 1318 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 CIB2O75838 187 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 PICALMQ13492 652 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 DAAM2Q86T65 1068 aa21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 NSFL1CQ9UNZ2 370 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-204ENST00000463837 KLHL30Q0D2K2 578 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 MORC3Q14149 939 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 DESI2Q9BSY9 194 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 TRIM31Q9BZY9 425 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 FANCLQ9NW38 375 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 CEP170Q5SW79 1584 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 FAM89AQ96GI7 184 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 POLR3EQ9NVU0 708 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 LRWD1Q9UFC0 647 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 CCDC110Q8TBZ0 833 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 ZNF532Q9HCE3 1301 aa21.1■□□□□ 0.97
CCDC88B-204ENST00000463837 PTCH1Q13635 1447 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 ZAP70P43403 619 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 CABP7Q86V35 215 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 SPTLC3Q9NUV7 552 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 ATP10AO60312 1499 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 E7EVH7 732 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 ERCC5P28715 1186 aaPredicted RBP21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 GNGT1P63211 74 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 KLHL7Q8IXQ5 586 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 RASEFQ8IZ41 740 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 COMMD10Q9Y6G5 202 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 HSPD1P10809 573 aaKnown RBP21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 FBXO18Q8NFZ0 1043 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 SH3TC1Q8TE82 1336 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 TSNAXIP1Q2TAA8 658 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 CAPS2Q9BXY5 557 aa21.09■□□□□ 0.97
CCDC88B-204ENST00000463837 PDIA3P30101 505 aaKnown RBP21.08■□□□□ 0.97
CCDC88B-204ENST00000463837 PLS1Q14651 629 aa21.08■□□□□ 0.97
CCDC88B-204ENST00000463837 SPATA5Q8NB90 893 aa21.08■□□□□ 0.97
CCDC88B-204ENST00000463837 STAMQ92783 540 aa21.08■□□□□ 0.97
CCDC88B-204ENST00000463837 SCRN1Q12765 414 aa21.08■□□□□ 0.97
CCDC88B-204ENST00000463837 PNMA8AQ86V59 439 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-204ENST00000463837 CACTINQ8WUQ7 758 aaKnown RBP21.08■□□□□ 0.97
CCDC88B-204ENST00000463837 GTPBP6O43824 516 aaPredicted RBP21.08■□□□□ 0.96
CCDC88B-204ENST00000463837 ZNF594Q96JF6 807 aaPredicted RBP21.08■□□□□ 0.96
CCDC88B-204ENST00000463837 NRBP1Q9UHY1 535 aa21.08■□□□□ 0.96
CCDC88B-204ENST00000463837 TAF5LO75529 589 aa21.08■□□□□ 0.96
CCDC88B-204ENST00000463837 MAP2K2P36507 400 aa21.08■□□□□ 0.96
CCDC88B-204ENST00000463837 CTDSPL2Q05D32 466 aa21.08■□□□□ 0.96
CCDC88B-204ENST00000463837 RCOR1Q9UKL0 485 aa21.08■□□□□ 0.96
CCDC88B-204ENST00000463837 HGSO14964 777 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 SLC39A14Q15043 492 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 CLEC17AQ6ZS10 378 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 DDX41Q9UJV9 622 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 LMTK3Q96Q04 1460 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 PCK1P35558 622 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 CPSF2Q9P2I0 782 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 ATP7BP35670 1465 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 ZNF853P0CG23 659 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 PEX26Q7Z412 305 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 MAIP1Q8WWC4 291 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 TXKP42681 527 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 ZNF365Q70YC5 407 aa21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 APBB1IPQ7Z5R6 666 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-204ENST00000463837 KCNA6P17658 529 aa21.06■□□□□ 0.96
CCDC88B-204ENST00000463837 TRAPPC3LQ5T215 181 aa21.06■□□□□ 0.96
CCDC88B-204ENST00000463837 SF3A3Q12874 501 aaKnown RBP eCLIP21.06■□□□□ 0.96
CCDC88B-204ENST00000463837 TYW1BQ6NUM6 668 aa21.06■□□□□ 0.96
CCDC88B-204ENST00000463837 ZNF654Q8IZM8 581 aa21.06■□□□□ 0.96
CCDC88B-204ENST00000463837 SNX29Q8TEQ0 813 aa21.06■□□□□ 0.96
CCDC88B-204ENST00000463837 HSPA2P54652 639 aa21.06■□□□□ 0.96
CCDC88B-204ENST00000463837 VEZTQ9HBM0 779 aa21.06■□□□□ 0.96
CCDC88B-204ENST00000463837 ARHGAP24Q8N264 748 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms