RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 WDR18Q9BV38 432 aa9.15□□□□□ -0.94
USP4-207ENST00000462673 GZF1Q9H116 711 aaPredicted RBP9.15□□□□□ -0.94
USP4-207ENST00000462673 ZCCHC17Q9NP64 241 aaKnown RBP9.15□□□□□ -0.94
USP4-207ENST00000462673 ANO2Q9NQ90 1003 aa9.15□□□□□ -0.94
USP4-207ENST00000462673 TOMM22Q9NS69 142 aa9.15□□□□□ -0.94
USP4-207ENST00000462673 TCHHQ07283 1943 aa9.15□□□□□ -0.95
USP4-207ENST00000462673 TSPY2A6NKD2 308 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 GH2P01242 217 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 ARHGEF6Q15052 776 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 SLC4A8Q2Y0W8 1093 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 AKNAD1Q5T1N1 836 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 RASAL3Q86YV0 1011 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 CDAN1Q8IWY9 1227 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 CLMNQ96JQ2 1002 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 TTC14Q96N46 770 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 PNMA3Q9UL41 463 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 SYNPO2Q9UMS6 1093 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 FZD1Q9UP38 647 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 AFG3L2Q9Y4W6 797 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 SNCAIPQ9Y6H5 919 aa9.14□□□□□ -0.95
USP4-207ENST00000462673 MYO5AQ9Y4I1 1855 aaKnown RBP9.14□□□□□ -0.95
USP4-207ENST00000462673 ERICH2A1L162 156 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 TESPA1A2RU30 521 aaPredicted RBP9.13□□□□□ -0.95
USP4-207ENST00000462673 FAM155AB1AL88 458 aaPredicted RBP9.13□□□□□ -0.95
USP4-207ENST00000462673 IRF6O14896 467 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 RANBP6O60518 1105 aaKnown RBP9.13□□□□□ -0.95
USP4-207ENST00000462673 FGRP09769 529 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 OSBPP22059 807 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 SHMT1P34896 483 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 BACE1P56817 501 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 HTRA3P83110 453 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 TFAP4Q01664 338 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 SPP2Q13103 211 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 KRT32Q14532 448 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 SART3Q15020 963 aaKnown RBP9.13□□□□□ -0.95
USP4-207ENST00000462673 VPS53Q5VIR6 699 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 USP17L2Q6R6M4 530 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 RALYLQ86SE5 291 aaKnown RBP9.13□□□□□ -0.95
USP4-207ENST00000462673 ZNF589Q86UQ0 364 aaPredicted RBP9.13□□□□□ -0.95
USP4-207ENST00000462673 JMYQ8N9B5 988 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 PROCA1Q8NCQ7 364 aaPredicted RBP9.13□□□□□ -0.95
USP4-207ENST00000462673 FEZ1Q99689 392 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 GOPCQ9HD26 462 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 SAGE1Q9NXZ1 904 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 ZBTB21Q9ULJ3 1066 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 KCNH4Q9UQ05 1017 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 SLC45A1Q9Y2W3 748 aa9.13□□□□□ -0.95
USP4-207ENST00000462673 MYH1P12882 1939 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 CCL15-CCL14A0A0B4J2E2 113 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 TRIM75PA6NK02 468 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 FAM196BA6NMK8 535 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 ORC4O43929 436 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 GDF11O95390 407 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 TTLL1O95922 423 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 HMGB1P09429 215 aaKnown RBP9.12□□□□□ -0.95
USP4-207ENST00000462673 CYP2D6P10635 497 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 TERF1P54274 439 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 MKRN3Q13064 507 aaKnown RBP9.12□□□□□ -0.95
USP4-207ENST00000462673 CCL15Q16663 113 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 RRP12Q5JTH9 1297 aaKnown RBP9.12□□□□□ -0.95
USP4-207ENST00000462673 IFNL1Q8IU54 200 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 STK11IPQ8N1F8 1099 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 TMTC2Q8N394 836 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 SPRYD3Q8NCJ5 442 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 NEDD1Q8NHV4 660 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 NCOA7Q8NI08 942 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 GTF3C2Q8WUA4 911 aaPredicted RBP9.12□□□□□ -0.95
USP4-207ENST00000462673 STAG1Q8WVM7 1258 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 LPAR1Q92633 364 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 TNPO1Q92973 898 aaKnown RBP9.12□□□□□ -0.95
USP4-207ENST00000462673 DYNLL2Q96FJ2 89 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 MAP7D2Q96T17 732 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 ZFYVE28Q9HCC9 887 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 EPB41L4AQ9HCS5 686 aaPredicted RBP9.12□□□□□ -0.95
USP4-207ENST00000462673 TCP11L1Q9NUJ3 509 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 NYAP2Q9P242 653 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 ROBO3Q96MS0 1386 aa9.12□□□□□ -0.95
USP4-207ENST00000462673 FOCADQ5VW36 1801 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 CYP2D7A0A087X1C5 515 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 A0A0G2JLL6 359 aaPredicted RBP9.11□□□□□ -0.95
USP4-207ENST00000462673 AOC2O75106 756 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 PSMA5P28066 241 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 ATP2B2Q01814 1243 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 ICA1Q05084 483 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 CTDSPL2Q05D32 466 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 SEPT2Q15019 361 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 SH3D19Q5HYK7 790 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 PRRT2Q7Z6L0 340 aaPredicted RBP9.11□□□□□ -0.95
USP4-207ENST00000462673 ANKRD23Q86SG2 305 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 MKL1Q969V6 931 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 MS4A4AQ96JQ5 239 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 PPP1R9BQ96SB3 815 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 UBAC1Q9BSL1 405 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 MTA3Q9BTC8 594 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 KIAA1683Q9H0B3 1180 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 DNAJC18Q9H819 358 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 WBP1LQ9NX94 342 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 HOXC10Q9NYD6 342 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 SSC5DA1L4H1 1573 aa9.11□□□□□ -0.95
USP4-207ENST00000462673 USP17L15C9J2P7 530 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 147.1 ms