RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 TRIM32Q13049 653 aa18.65■□□□□ 0.58
SKA3-204ENST00000462482 WDR78Q5VTH9 848 aa18.65■□□□□ 0.58
SKA3-204ENST00000462482 GPR142Q7Z601 462 aa18.65■□□□□ 0.58
SKA3-204ENST00000462482 DNAJC2Q99543 621 aaKnown RBP18.65■□□□□ 0.58
SKA3-204ENST00000462482 KIAA1683Q9H0B3 1180 aa18.65■□□□□ 0.58
SKA3-204ENST00000462482 LOC285556D6RIA3 1793 aa18.65■□□□□ 0.58
SKA3-204ENST00000462482 BRCA2P51587 3418 aa18.64■□□□□ 0.57
SKA3-204ENST00000462482 A0A1W2PPC1 479 aa18.64■□□□□ 0.57
SKA3-204ENST00000462482 DIS3LQ8TF46 1054 aaKnown RBP18.64■□□□□ 0.57
SKA3-204ENST00000462482 APBA2Q99767 749 aa18.64■□□□□ 0.57
SKA3-204ENST00000462482 C11orf49Q9H6J7 331 aa18.64■□□□□ 0.57
SKA3-204ENST00000462482 MCM9Q9NXL9 1143 aa18.64■□□□□ 0.57
SKA3-204ENST00000462482 DDX19BQ9UMR2 479 aa18.64■□□□□ 0.57
SKA3-204ENST00000462482 IVNS1ABPQ9Y6Y0 642 aa18.64■□□□□ 0.57
SKA3-204ENST00000462482 GOLIM4O00461 696 aa18.63■□□□□ 0.57
SKA3-204ENST00000462482 MPHOSPH10O00566 681 aaKnown RBP18.63■□□□□ 0.57
SKA3-204ENST00000462482 PEX10O60683 326 aa18.63■□□□□ 0.57
SKA3-204ENST00000462482 PDE6AP16499 860 aa18.63■□□□□ 0.57
SKA3-204ENST00000462482 Q3C1V9 767 aa18.63■□□□□ 0.57
SKA3-204ENST00000462482 C7orf61Q8IZ16 206 aa18.63■□□□□ 0.57
SKA3-204ENST00000462482 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.63■□□□□ 0.57
SKA3-204ENST00000462482 RIOK1Q9BRS2 568 aaKnown RBP18.63■□□□□ 0.57
SKA3-204ENST00000462482 PORCNQ9H237 461 aa18.63■□□□□ 0.57
SKA3-204ENST00000462482 PTPRFP10586 1907 aa18.62■□□□□ 0.57
SKA3-204ENST00000462482 RAB11FIP3O75154 756 aa18.62■□□□□ 0.57
SKA3-204ENST00000462482 VCAM1P19320 739 aa18.62■□□□□ 0.57
SKA3-204ENST00000462482 PLCD1P51178 756 aa18.62■□□□□ 0.57
SKA3-204ENST00000462482 MAP3K21Q5TCX8 1036 aa18.62■□□□□ 0.57
SKA3-204ENST00000462482 MFSD14CQ5VZR4 134 aa18.62■□□□□ 0.57
SKA3-204ENST00000462482 CATSPERGQ6ZRH7 1159 aa18.62■□□□□ 0.57
SKA3-204ENST00000462482 EDC3Q96F86 508 aaKnown RBP18.62■□□□□ 0.57
SKA3-204ENST00000462482 OGDHLQ9ULD0 1010 aa18.62■□□□□ 0.57
SKA3-204ENST00000462482 MGAMO43451 1857 aa18.62■□□□□ 0.57
SKA3-204ENST00000462482 ZNF532Q9HCE3 1301 aa18.61■□□□□ 0.57
SKA3-204ENST00000462482 SHMT1P34896 483 aa18.61■□□□□ 0.57
SKA3-204ENST00000462482 CACNB2Q08289 660 aaPredicted RBP18.61■□□□□ 0.57
SKA3-204ENST00000462482 MAP2K5Q13163 448 aa18.61■□□□□ 0.57
SKA3-204ENST00000462482 MORN1Q5T089 497 aa18.61■□□□□ 0.57
SKA3-204ENST00000462482 AMOTL1Q8IY63 956 aa18.61■□□□□ 0.57
SKA3-204ENST00000462482 ACER1Q8TDN7 264 aa18.61■□□□□ 0.57
SKA3-204ENST00000462482 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.61■□□□□ 0.57
SKA3-204ENST00000462482 RPAP3Q9H6T3 665 aaPredicted RBP18.61■□□□□ 0.57
SKA3-204ENST00000462482 STAP2Q9UGK3 403 aa18.61■□□□□ 0.57
SKA3-204ENST00000462482 SLC15A5A6NIM6 579 aa18.6■□□□□ 0.57
SKA3-204ENST00000462482 USP6NLQ92738 828 aa18.6■□□□□ 0.57
SKA3-204ENST00000462482 DDRGK1Q96HY6 314 aa18.6■□□□□ 0.57
SKA3-204ENST00000462482 PRO3102Q9H379 93 aa18.6■□□□□ 0.57
SKA3-204ENST00000462482 COG6Q9Y2V7 657 aa18.6■□□□□ 0.57
SKA3-204ENST00000462482 ATP2B2Q01814 1243 aa18.59■□□□□ 0.57
SKA3-204ENST00000462482 SEPT2Q15019 361 aa18.59■□□□□ 0.57
SKA3-204ENST00000462482 LBX2Q6XYB7 198 aa18.59■□□□□ 0.57
SKA3-204ENST00000462482 HOXC10Q9NYD6 342 aa18.59■□□□□ 0.57
SKA3-204ENST00000462482 SWAP70Q9UH65 585 aa18.59■□□□□ 0.57
SKA3-204ENST00000462482 ZMYND8Q9ULU4 1186 aaPredicted RBP18.59■□□□□ 0.57
SKA3-204ENST00000462482 CCL14Q16627 93 aa18.58■□□□□ 0.56
SKA3-204ENST00000462482 TMEM179Q6ZVK1 233 aa18.58■□□□□ 0.56
SKA3-204ENST00000462482 TANGO6Q9C0B7 1094 aa18.58■□□□□ 0.56
SKA3-204ENST00000462482 SH2D4AQ9H788 454 aa18.58■□□□□ 0.56
SKA3-204ENST00000462482 PAG1Q9NWQ8 432 aa18.58■□□□□ 0.56
SKA3-204ENST00000462482 ATAD5Q96QE3 1844 aa18.58■□□□□ 0.56
SKA3-204ENST00000462482 CEP290O15078 2479 aa18.58■□□□□ 0.56
SKA3-204ENST00000462482 CNMDO75829 334 aa18.57■□□□□ 0.56
SKA3-204ENST00000462482 PTPREP23469 700 aa18.57■□□□□ 0.56
SKA3-204ENST00000462482 GABPAQ06546 454 aa18.57■□□□□ 0.56
SKA3-204ENST00000462482 COG2Q14746 738 aa18.57■□□□□ 0.56
SKA3-204ENST00000462482 LCORLQ8N3X6 602 aa18.57■□□□□ 0.56
SKA3-204ENST00000462482 SDR42E1Q8WUS8 393 aa18.57■□□□□ 0.56
SKA3-204ENST00000462482 ARMT1Q9H993 441 aa18.57■□□□□ 0.56
SKA3-204ENST00000462482 DCP1AQ9NPI6 582 aaPredicted RBP18.57■□□□□ 0.56
SKA3-204ENST00000462482 ZBTB40Q9NUA8 1239 aa18.57■□□□□ 0.56
SKA3-204ENST00000462482 SIPA1L1O43166 1804 aa18.56■□□□□ 0.56
SKA3-204ENST00000462482 SPDYE16A6NNV3 312 aaPredicted RBP18.56■□□□□ 0.56
SKA3-204ENST00000462482 MSCO60682 206 aa18.56■□□□□ 0.56
SKA3-204ENST00000462482 CNGA1P29973 690 aa18.56■□□□□ 0.56
SKA3-204ENST00000462482 CCND3P30281 292 aaPredicted RBP18.56■□□□□ 0.56
SKA3-204ENST00000462482 BOLA2Q9H3K6 86 aa18.56■□□□□ 0.56
SKA3-204ENST00000462482 ARHGEF10LQ9HCE6 1279 aa18.56■□□□□ 0.56
SKA3-204ENST00000462482 ATP8A2Q9NTI2 1148 aa18.56■□□□□ 0.56
SKA3-204ENST00000462482 BTBD7Q9P203 1132 aa18.56■□□□□ 0.56
SKA3-204ENST00000462482 TCRBV5S4A2TA0A5A2 114 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 MBD4O95243 580 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 ATP5JP18859 108 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 GUCY1A2P33402 732 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 BMP8BP34820 402 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 MNX1P50219 401 aaPredicted RBP18.55■□□□□ 0.56
SKA3-204ENST00000462482 ZSCAN25Q6NSZ9 544 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 POTEEQ6S8J3 1075 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 DPP9Q86TI2 863 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 LPAR1Q92633 364 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 CCDC17Q96LX7 622 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 SLC5A4Q9NY91 659 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 TRIOBPQ9H2D6 2365 aa18.55■□□□□ 0.56
SKA3-204ENST00000462482 STRNO43815 780 aa18.54■□□□□ 0.56
SKA3-204ENST00000462482 HOXC6P09630 235 aa18.54■□□□□ 0.56
SKA3-204ENST00000462482 SYN1P17600 705 aa18.54■□□□□ 0.56
SKA3-204ENST00000462482 ADD2P35612 726 aa18.54■□□□□ 0.56
SKA3-204ENST00000462482 GRB14Q14449 540 aa18.54■□□□□ 0.56
SKA3-204ENST00000462482 LHX8Q68G74 356 aa18.54■□□□□ 0.56
SKA3-204ENST00000462482 MB21D1Q8N884 522 aa18.54■□□□□ 0.56
SKA3-204ENST00000462482 GDF15Q99988 308 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms