RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 DZIP1LQ8IYY4 767 aaKnown RBP9.97□□□□□ -0.81
USP54-208ENST00000461520 FOXD3Q9UJU5 478 aaPredicted RBP9.97□□□□□ -0.81
USP54-208ENST00000461520 USTQ9Y2C2 406 aa9.97□□□□□ -0.81
USP54-208ENST00000461520 PCDH11XQ9BZA7 1347 aa9.97□□□□□ -0.81
USP54-208ENST00000461520 PCDH11YQ9BZA8 1340 aa9.97□□□□□ -0.81
USP54-208ENST00000461520 NSD2O96028 1365 aa9.97□□□□□ -0.81
USP54-208ENST00000461520 QSER1Q2KHR3 1735 aa9.96□□□□□ -0.81
USP54-208ENST00000461520 SHANK3Q9BYB0 1731 aa9.96□□□□□ -0.81
USP54-208ENST00000461520 TUBGCP6Q96RT7 1819 aa9.96□□□□□ -0.81
USP54-208ENST00000461520 PHACTR2O75167 634 aa9.96□□□□□ -0.82
USP54-208ENST00000461520 PMEPA1Q969W9 287 aa9.96□□□□□ -0.82
USP54-208ENST00000461520 WASHC2AQ641Q2 1341 aa9.96□□□□□ -0.82
USP54-208ENST00000461520 DOT1LQ8TEK3 1739 aa9.96□□□□□ -0.82
USP54-208ENST00000461520 PDE2AO00408 941 aaPredicted RBP9.95□□□□□ -0.82
USP54-208ENST00000461520 DDX3YO15523 660 aaKnown RBP9.95□□□□□ -0.82
USP54-208ENST00000461520 HMGB2P26583 209 aaKnown RBP9.95□□□□□ -0.82
USP54-208ENST00000461520 SERPINB4P48594 390 aa9.95□□□□□ -0.82
USP54-208ENST00000461520 C1QTNF8P60827 252 aa9.95□□□□□ -0.82
USP54-208ENST00000461520 GPR162Q16538 588 aa9.95□□□□□ -0.82
USP54-208ENST00000461520 FAM117BQ6P1L5 589 aa9.95□□□□□ -0.82
USP54-208ENST00000461520 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.95□□□□□ -0.82
USP54-208ENST00000461520 KLHDC7BQ96G42 594 aa9.95□□□□□ -0.82
USP54-208ENST00000461520 MAP3K5Q99683 1374 aa9.95□□□□□ -0.82
USP54-208ENST00000461520 NCAPD2Q15021 1401 aa9.95□□□□□ -0.82
USP54-208ENST00000461520 COL24A1Q17RW2 1714 aa9.94□□□□□ -0.82
USP54-208ENST00000461520 FAM177BA6PVY3 158 aa9.94□□□□□ -0.82
USP54-208ENST00000461520 PPM1GO15355 546 aaPredicted RBP9.94□□□□□ -0.82
USP54-208ENST00000461520 HSPA5P11021 654 aaKnown RBP9.94□□□□□ -0.82
USP54-208ENST00000461520 GLB1P16278 677 aa9.94□□□□□ -0.82
USP54-208ENST00000461520 USP5P45974 858 aa9.94□□□□□ -0.82
USP54-208ENST00000461520 ACAD11Q709F0 780 aa9.94□□□□□ -0.82
USP54-208ENST00000461520 CCER1Q8TC90 406 aaPredicted RBP9.94□□□□□ -0.82
USP54-208ENST00000461520 OSMRQ99650 979 aa9.94□□□□□ -0.82
USP54-208ENST00000461520 POLR3GLQ9BT43 218 aa9.94□□□□□ -0.82
USP54-208ENST00000461520 TFCP2L1Q9NZI6 479 aa9.94□□□□□ -0.82
USP54-208ENST00000461520 CCNL1Q9UK58 526 aaPredicted RBP9.94□□□□□ -0.82
USP54-208ENST00000461520 LY75O60449 1722 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 PNPLA7Q6ZV29 1317 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 SCO2A0A1W2PP80 73 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 CYP27B1O15528 508 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 EHHADHQ08426 723 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 PRR23CQ6ZRP0 262 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 SNX29Q8TEQ0 813 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 ZKSCAN3Q9BRR0 538 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 SEC31BQ9NQW1 1179 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 POLKQ9UBT6 870 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 ANKRD26Q9UPS8 1709 aa9.93□□□□□ -0.82
USP54-208ENST00000461520 H3BRJ5 948 aa9.92□□□□□ -0.82
USP54-208ENST00000461520 ICMTO60725 284 aa9.92□□□□□ -0.82
USP54-208ENST00000461520 ADAM11O75078 769 aa9.92□□□□□ -0.82
USP54-208ENST00000461520 POLD1P28340 1107 aa9.92□□□□□ -0.82
USP54-208ENST00000461520 Q6ZS46 218 aa9.92□□□□□ -0.82
USP54-208ENST00000461520 GJD3Q8N144 294 aa9.92□□□□□ -0.82
USP54-208ENST00000461520 KLHL23Q8NBE8 558 aa9.92□□□□□ -0.82
USP54-208ENST00000461520 FOXD4L4Q8WXT5 416 aaPredicted RBP9.92□□□□□ -0.82
USP54-208ENST00000461520 NXPE3Q969Y0 559 aa9.92□□□□□ -0.82
USP54-208ENST00000461520 UBL7Q96S82 380 aaPredicted RBP9.92□□□□□ -0.82
USP54-208ENST00000461520 SPG7Q9UQ90 795 aa9.92□□□□□ -0.82
USP54-208ENST00000461520 GOLGB1Q14789 3259 aaKnown RBP9.92□□□□□ -0.82
USP54-208ENST00000461520 PLEKHG2Q9H7P9 1386 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 CABP4P57796 275 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 ECM1Q16610 540 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 DUOXA2Q1HG44 320 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 HGSNATQ68CP4 663 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 B4GALNT3Q6L9W6 998 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 MPRIPQ6WCQ1 1025 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 TMEM102Q8N9M5 508 aaPredicted RBP9.91□□□□□ -0.82
USP54-208ENST00000461520 UBASH3BQ8TF42 649 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 SLC7A3Q8WY07 619 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 PANK3Q9H999 370 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 LATS2Q9NRM7 1088 aa9.91□□□□□ -0.82
USP54-208ENST00000461520 PKD1L3Q7Z443 1732 aa9.9□□□□□ -0.82
USP54-208ENST00000461520 PALLDQ8WX93 1383 aa9.9□□□□□ -0.82
USP54-208ENST00000461520 H3BRB1 525 aa9.9□□□□□ -0.82
USP54-208ENST00000461520 POLR3DP05423 398 aaPredicted RBP9.9□□□□□ -0.82
USP54-208ENST00000461520 EDN3P14138 238 aa9.9□□□□□ -0.82
USP54-208ENST00000461520 EIF4A2Q14240 407 aaKnown RBP9.9□□□□□ -0.82
USP54-208ENST00000461520 KIAA1211Q6ZU35 1233 aa9.9□□□□□ -0.82
USP54-208ENST00000461520 NLGN2Q8NFZ4 835 aa9.9□□□□□ -0.82
USP54-208ENST00000461520 SMARCC1Q92922 1105 aaPredicted RBP9.9□□□□□ -0.82
USP54-208ENST00000461520 TUT1Q9H6E5 874 aaKnown RBP9.9□□□□□ -0.82
USP54-208ENST00000461520 EGFL7Q9UHF1 273 aa9.9□□□□□ -0.82
USP54-208ENST00000461520 SOX13Q9UN79 622 aa9.9□□□□□ -0.82
USP54-208ENST00000461520 MAP2P11137 1827 aaKnown RBP9.89□□□□□ -0.83
USP54-208ENST00000461520 TNNT2P45379 298 aaPredicted RBP9.89□□□□□ -0.83
USP54-208ENST00000461520 IFNL2Q8IZJ0 200 aa9.89□□□□□ -0.83
USP54-208ENST00000461520 RETREG2Q8NC44 543 aa9.89□□□□□ -0.83
USP54-208ENST00000461520 FLAD1Q8NFF5 587 aa9.89□□□□□ -0.83
USP54-208ENST00000461520 ZFYVE28Q9HCC9 887 aa9.89□□□□□ -0.83
USP54-208ENST00000461520 PHKG2P15735 406 aa9.88□□□□□ -0.83
USP54-208ENST00000461520 NLRP12P59046 1061 aa9.88□□□□□ -0.83
USP54-208ENST00000461520 PEAR1Q5VY43 1037 aaPredicted RBP9.88□□□□□ -0.83
USP54-208ENST00000461520 COL23A1Q86Y22 540 aaPredicted RBP9.88□□□□□ -0.83
USP54-208ENST00000461520 GLYCTKQ8IVS8 523 aa9.88□□□□□ -0.83
USP54-208ENST00000461520 PIGBQ92521 554 aa9.88□□□□□ -0.83
USP54-208ENST00000461520 TOGARAM1Q9Y4F4 1720 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 IGSF1Q8N6C5 1336 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 VN1R5Q7Z5H4 357 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 ASAP3Q8TDY4 903 aa9.87□□□□□ -0.83
USP54-208ENST00000461520 BSNDQ8WZ55 320 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms