RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 ARID1BQ8NFD5 2236 aaPredicted RBP6.81□□□□□ -1.32
VPS41-209ENST00000457055 CCDC194A0A1B0GVG4 234 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 SOWAHDA6NJG2 315 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 ARNTP27540 789 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 POLD1P28340 1107 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 OXCT1P55809 520 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 IGBP1P78318 339 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 IRX3P78415 501 aaPredicted RBP6.81□□□□□ -1.32
VPS41-209ENST00000457055 HSP90AB2PQ58FF8 381 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 ZNF280DQ6N043 979 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS41-209ENST00000457055 TOP6BLQ8N6T0 577 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 ACSBG1Q96GR2 724 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 MKNK2Q9HBH9 465 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 BIN2Q9UBW5 565 aaPredicted RBP6.81□□□□□ -1.32
VPS41-209ENST00000457055 FEZ2Q9UHY8 353 aaPredicted RBP6.81□□□□□ -1.32
VPS41-209ENST00000457055 FRMD4BQ9Y2L6 1034 aa6.81□□□□□ -1.32
VPS41-209ENST00000457055 PPRC1Q5VV67 1664 aaKnown RBP6.81□□□□□ -1.32
VPS41-209ENST00000457055 RNASE1P07998 156 aaKnown RBP6.8□□□□□ -1.32
VPS41-209ENST00000457055 ITIH2P19823 946 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 NME2P22392 152 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 ERVK-24P63145 666 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 AOC3Q16853 763 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 NBPF9Q3BBW0 867 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 ZC3H12AQ5D1E8 599 aaKnown RBP6.8□□□□□ -1.32
VPS41-209ENST00000457055 NXPE4Q6UWF7 544 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 ATG4DQ86TL0 474 aaPredicted RBP6.8□□□□□ -1.32
VPS41-209ENST00000457055 OTUD6BQ8N6M0 293 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 RNF214Q8ND24 703 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 PI4K2BQ8TCG2 481 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 GPBAR1Q8TDU6 330 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 PMM1Q92871 262 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 EMILIN2Q9BXX0 1053 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 CBX8Q9HC52 389 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 MBNL3Q9NUK0 354 aaKnown RBP6.8□□□□□ -1.32
VPS41-209ENST00000457055 DCTN4Q9UJW0 460 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 ADAMTS6Q9UKP5 1117 aa6.8□□□□□ -1.32
VPS41-209ENST00000457055 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS41-209ENST00000457055 GRIN2BQ13224 1484 aa6.79□□□□□ -1.32
VPS41-209ENST00000457055 CARMIL2Q6F5E8 1435 aa6.79□□□□□ -1.32
VPS41-209ENST00000457055 hCG_2014768A0A024R1R8 64 aa6.79□□□□□ -1.32
VPS41-209ENST00000457055 TMEM265A0A087WTH1 108 aa6.79□□□□□ -1.32
VPS41-209ENST00000457055 PNMA6FA0A0J9YX94 578 aa6.79□□□□□ -1.32
VPS41-209ENST00000457055 EPB41L2O43491 1005 aaKnown RBP6.79□□□□□ -1.32
VPS41-209ENST00000457055 WDHD1O75717 1129 aaPredicted RBP6.79□□□□□ -1.32
VPS41-209ENST00000457055 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS41-209ENST00000457055 PNISRQ8TF01 805 aaKnown RBP6.79□□□□□ -1.32
VPS41-209ENST00000457055 PLAGL2Q9UPG8 496 aa6.79□□□□□ -1.32
VPS41-209ENST00000457055 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.79□□□□□ -1.32
VPS41-209ENST00000457055 ZNF500O60304 480 aaPredicted RBP6.78□□□□□ -1.32
VPS41-209ENST00000457055 COPB2P35606 906 aa6.78□□□□□ -1.32
VPS41-209ENST00000457055 HSP90AA2PQ14568 343 aaPredicted RBP6.78□□□□□ -1.32
VPS41-209ENST00000457055 CC2D1BQ5T0F9 858 aaKnown RBP6.78□□□□□ -1.32
VPS41-209ENST00000457055 ZNF648Q5T619 568 aaPredicted RBP6.78□□□□□ -1.32
VPS41-209ENST00000457055 DPH6Q7L8W6 267 aa6.78□□□□□ -1.32
VPS41-209ENST00000457055 AMOTL1Q8IY63 956 aa6.78□□□□□ -1.32
VPS41-209ENST00000457055 MSL3Q8N5Y2 521 aaKnown RBP6.78□□□□□ -1.32
VPS41-209ENST00000457055 LRRN4CLQ8ND94 238 aa6.78□□□□□ -1.32
VPS41-209ENST00000457055 FAM168AQ92567 244 aa6.78□□□□□ -1.32
VPS41-209ENST00000457055 MKL1Q969V6 931 aa6.78□□□□□ -1.32
VPS41-209ENST00000457055 WWC3Q9ULE0 1092 aa6.78□□□□□ -1.32
VPS41-209ENST00000457055 TMA7Q9Y2S6 64 aaKnown RBP6.78□□□□□ -1.32
VPS41-209ENST00000457055 SHROOM2Q13796 1616 aa6.77□□□□□ -1.33
VPS41-209ENST00000457055 U2SURPO15042 1029 aaKnown RBP6.77□□□□□ -1.33
VPS41-209ENST00000457055 DHX16O60231 1041 aaKnown RBP6.77□□□□□ -1.33
VPS41-209ENST00000457055 PARNO95453 639 aaKnown RBP6.77□□□□□ -1.33
VPS41-209ENST00000457055 ZNF252P-AS1Q0IIN9 211 aa6.77□□□□□ -1.33
VPS41-209ENST00000457055 ENOX2Q16206 610 aaKnown RBP6.77□□□□□ -1.33
VPS41-209ENST00000457055 NAALADL2Q58DX5 795 aa6.77□□□□□ -1.33
VPS41-209ENST00000457055 ANGEL2Q5VTE6 544 aaKnown RBP6.77□□□□□ -1.33
VPS41-209ENST00000457055 ZKSCAN2Q63HK3 967 aa6.77□□□□□ -1.33
VPS41-209ENST00000457055 PICK1Q9NRD5 415 aa6.77□□□□□ -1.33
VPS41-209ENST00000457055 SBNO2Q9Y2G9 1366 aa6.77□□□□□ -1.33
VPS41-209ENST00000457055 CCDC88BA6NC98 1476 aa6.77□□□□□ -1.33
VPS41-209ENST00000457055 MAPKBP1O60336 1514 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 ADCY10Q96PN6 1610 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 GOLGA6CA6NDK9 693 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 GOLGA6BA6NDN3 693 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 STK10O94804 968 aaKnown RBP6.76□□□□□ -1.33
VPS41-209ENST00000457055 HSP90AA1P07900 732 aaKnown RBP6.76□□□□□ -1.33
VPS41-209ENST00000457055 GOLGA6DP0CG33 693 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 MAPK1P28482 360 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 HSPA2P54652 639 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 PLCB3Q01970 1234 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 DSC3Q14574 896 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 PPM1JQ5JR12 505 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 MPRIPQ6WCQ1 1025 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 TPTE2Q6XPS3 522 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 NOP9Q86U38 636 aaKnown RBP6.76□□□□□ -1.33
VPS41-209ENST00000457055 CCAR1Q8IX12 1150 aaKnown RBP6.76□□□□□ -1.33
VPS41-209ENST00000457055 C3orf58Q8NDZ4 430 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 NECAB3Q96P71 396 aaPredicted RBP6.76□□□□□ -1.33
VPS41-209ENST00000457055 GOLGA6AQ9NYA3 693 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 GTF2IRD1Q9UHL9 959 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 FAN1Q9Y2M0 1017 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 CSADQ9Y600 493 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 FGD5Q6ZNL6 1462 aa6.76□□□□□ -1.33
VPS41-209ENST00000457055 TOP2AP11388 1531 aaKnown RBP6.76□□□□□ -1.33
VPS41-209ENST00000457055 PRG4Q92954 1404 aaPredicted RBP6.76□□□□□ -1.33
VPS41-209ENST00000457055 DCDC2CA8MYV0 355 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms