RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 GRK4P32298 578 aa25.49■■□□□ 1.67
HMGB3-205ENST00000455596 SEPT2Q15019 361 aa25.49■■□□□ 1.67
HMGB3-205ENST00000455596 OSBP2Q969R2 916 aa25.49■■□□□ 1.67
HMGB3-205ENST00000455596 COA7Q96BR5 231 aa25.49■■□□□ 1.67
HMGB3-205ENST00000455596 P2RX7Q99572 595 aaKnown RBP25.49■■□□□ 1.67
HMGB3-205ENST00000455596 SALL3Q9BXA9 1300 aa25.48■■□□□ 1.67
HMGB3-205ENST00000455596 CYP2D7A0A087X1C5 515 aa25.48■■□□□ 1.67
HMGB3-205ENST00000455596 CTR9Q6PD62 1173 aa25.48■■□□□ 1.67
HMGB3-205ENST00000455596 TMEM179Q6ZVK1 233 aa25.48■■□□□ 1.67
HMGB3-205ENST00000455596 ACER1Q8TDN7 264 aa25.48■■□□□ 1.67
HMGB3-205ENST00000455596 ARPP21Q9UBL0 812 aaPredicted RBP25.48■■□□□ 1.67
HMGB3-205ENST00000455596 MORF4L1Q9UBU8 362 aa25.48■■□□□ 1.67
HMGB3-205ENST00000455596 KIAA0100Q14667 2235 aaKnown RBP25.48■■□□□ 1.67
HMGB3-205ENST00000455596 PLXNB2O15031 1838 aa25.47■■□□□ 1.67
HMGB3-205ENST00000455596 MYCP01106 439 aaPredicted RBP25.47■■□□□ 1.67
HMGB3-205ENST00000455596 HERVK_113P62684 666 aa25.47■■□□□ 1.67
HMGB3-205ENST00000455596 FSD1Q9BTV5 496 aa25.47■■□□□ 1.67
HMGB3-205ENST00000455596 CDK8P49336 464 aa25.46■■□□□ 1.67
HMGB3-205ENST00000455596 FLT3LGP49771 235 aa25.46■■□□□ 1.67
HMGB3-205ENST00000455596 C16orf86Q6ZW13 317 aa25.46■■□□□ 1.67
HMGB3-205ENST00000455596 SLAIN1Q8ND83 568 aa25.46■■□□□ 1.67
HMGB3-205ENST00000455596 GTF3C2Q8WUA4 911 aaPredicted RBP25.46■■□□□ 1.67
HMGB3-205ENST00000455596 CCDC17Q96LX7 622 aa25.46■■□□□ 1.67
HMGB3-205ENST00000455596 GSG1L2A8MUP6 293 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 USP17L15C9J2P7 530 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 USP17L13C9JLJ4 530 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 USP17L11C9JVI0 530 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 USP17L18D6R9N7 530 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 USP17L22D6RA61 530 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 USP17L17D6RBQ6 530 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 USP17L19D6RCP7 530 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 USP17L20D6RJB6 530 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 GPAA1O43292 621 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 GNAT2P19087 354 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 USP17L24Q0WX57 530 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 IRF5Q13568 498 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 GIMAP6Q6P9H5 292 aa25.45■■□□□ 1.66
HMGB3-205ENST00000455596 RWDD1Q9H446 243 aaPredicted RBP25.45■■□□□ 1.66
HMGB3-205ENST00000455596 GREB1LQ9C091 1923 aaPredicted RBP25.44■■□□□ 1.66
HMGB3-205ENST00000455596 SMIM22K7EJ46 135 aa25.44■■□□□ 1.66
HMGB3-205ENST00000455596 ADCY3O60266 1144 aa25.44■■□□□ 1.66
HMGB3-205ENST00000455596 AKR1B1P15121 316 aa25.44■■□□□ 1.66
HMGB3-205ENST00000455596 VCAM1P19320 739 aa25.44■■□□□ 1.66
HMGB3-205ENST00000455596 EN2P19622 333 aaPredicted RBP25.44■■□□□ 1.66
HMGB3-205ENST00000455596 SBK1Q52WX2 424 aa25.44■■□□□ 1.66
HMGB3-205ENST00000455596 GPRC5AQ8NFJ5 357 aa25.44■■□□□ 1.66
HMGB3-205ENST00000455596 BIN2Q9UBW5 565 aaPredicted RBP25.44■■□□□ 1.66
HMGB3-205ENST00000455596 M0R2C6 588 aa25.43■■□□□ 1.66
HMGB3-205ENST00000455596 UBXN2AP68543 259 aa25.43■■□□□ 1.66
HMGB3-205ENST00000455596 CATSPERGQ6ZRH7 1159 aa25.43■■□□□ 1.66
HMGB3-205ENST00000455596 EXOC6Q8TAG9 804 aa25.43■■□□□ 1.66
HMGB3-205ENST00000455596 TXNRD2Q9NNW7 524 aa25.43■■□□□ 1.66
HMGB3-205ENST00000455596 PARP14Q460N5 1801 aa25.42■■□□□ 1.66
HMGB3-205ENST00000455596 A0A1W2PRG0 241 aa25.42■■□□□ 1.66
HMGB3-205ENST00000455596 PXYLP1Q8TE99 480 aa25.42■■□□□ 1.66
HMGB3-205ENST00000455596 ARHGEF10LQ9HCE6 1279 aa25.42■■□□□ 1.66
HMGB3-205ENST00000455596 RBPJLQ9UBG7 517 aa25.42■■□□□ 1.66
HMGB3-205ENST00000455596 STAP2Q9UGK3 403 aa25.42■■□□□ 1.66
HMGB3-205ENST00000455596 TNRC18O15417 2968 aaPredicted RBP25.41■■□□□ 1.66
HMGB3-205ENST00000455596 RLFQ13129 1914 aa25.41■■□□□ 1.66
HMGB3-205ENST00000455596 PDE1AP54750 535 aa25.41■■□□□ 1.66
HMGB3-205ENST00000455596 ICA1Q05084 483 aa25.41■■□□□ 1.66
HMGB3-205ENST00000455596 MTFR1Q15390 333 aa25.41■■□□□ 1.66
HMGB3-205ENST00000455596 PAGR1Q9BTK6 254 aa25.41■■□□□ 1.66
HMGB3-205ENST00000455596 RPAP3Q9H6T3 665 aaPredicted RBP25.41■■□□□ 1.66
HMGB3-205ENST00000455596 SUPT16HQ9Y5B9 1047 aaKnown RBP25.41■■□□□ 1.66
HMGB3-205ENST00000455596 MYH4Q9Y623 1939 aa25.41■■□□□ 1.66
HMGB3-205ENST00000455596 CENPFP49454 3210 aa25.41■■□□□ 1.66
HMGB3-205ENST00000455596 PEX10O60683 326 aa25.4■■□□□ 1.66
HMGB3-205ENST00000455596 APPP05067 770 aa25.4■■□□□ 1.66
HMGB3-205ENST00000455596 TDO2P48775 406 aa25.4■■□□□ 1.66
HMGB3-205ENST00000455596 ERVK-9P63128 1117 aa25.4■■□□□ 1.66
HMGB3-205ENST00000455596 ERVK-24P63145 666 aa25.4■■□□□ 1.66
HMGB3-205ENST00000455596 SMC5Q8IY18 1101 aa25.4■■□□□ 1.66
HMGB3-205ENST00000455596 SEC62Q99442 399 aaKnown RBP25.4■■□□□ 1.66
HMGB3-205ENST00000455596 SH2D4AQ9H788 454 aa25.4■■□□□ 1.66
HMGB3-205ENST00000455596 MINDY4BA8MYZ0 360 aa25.39■■□□□ 1.66
HMGB3-205ENST00000455596 PATL2C9JE40 543 aaKnown RBP25.39■■□□□ 1.66
HMGB3-205ENST00000455596 ELNP15502 786 aa25.39■■□□□ 1.66
HMGB3-205ENST00000455596 ZMYM1Q5SVZ6 1142 aa25.39■■□□□ 1.66
HMGB3-205ENST00000455596 EVI5LQ96CN4 794 aa25.39■■□□□ 1.66
HMGB3-205ENST00000455596 LNPKQ9C0E8 428 aa25.39■■□□□ 1.66
HMGB3-205ENST00000455596 EPB41L4AQ9HCS5 686 aaPredicted RBP25.39■■□□□ 1.66
HMGB3-205ENST00000455596 RABGAP1Q9Y3P9 1069 aa25.39■■□□□ 1.66
HMGB3-205ENST00000455596 ROBO3Q96MS0 1386 aa25.39■■□□□ 1.65
HMGB3-205ENST00000455596 A0A0G2JMZ2 1700 aa25.38■■□□□ 1.65
HMGB3-205ENST00000455596 CCL5P13501 91 aa25.38■■□□□ 1.65
HMGB3-205ENST00000455596 MAPK4P31152 587 aa25.38■■□□□ 1.65
HMGB3-205ENST00000455596 Q3C1V9 767 aa25.38■■□□□ 1.65
HMGB3-205ENST00000455596 CLEC10AQ8IUN9 316 aa25.38■■□□□ 1.65
HMGB3-205ENST00000455596 CCAR1Q8IX12 1150 aaKnown RBP25.38■■□□□ 1.65
HMGB3-205ENST00000455596 GJD2Q9UKL4 321 aa25.38■■□□□ 1.65
HMGB3-205ENST00000455596 TMX2Q9Y320 296 aa25.38■■□□□ 1.65
HMGB3-205ENST00000455596 B4GALNT3Q6L9W6 998 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 POTEEQ6S8J3 1075 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 LBX2Q6XYB7 198 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 SIAH1Q8IUQ4 282 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 IFNL3Q8IZI9 196 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 STK11IPQ8N1F8 1099 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 NKX2-3Q8TAU0 364 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms