RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 ALX1Q15699 326 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 SBK1Q52WX2 424 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 DCAF15Q66K64 600 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 ZFPM1Q8IX07 1006 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 PI4KBQ9UBF8 816 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 SAP30BPQ9UHR5 308 aaKnown RBP10.43□□□□□ -0.74
SYNE1-214ENST00000454018 HERC5Q9UII4 1024 aaKnown RBP10.43□□□□□ -0.74
SYNE1-214ENST00000454018 PALD1Q9ULE6 856 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 TRAF5O00463 557 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 NBPF12Q5TAG4 269 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-214ENST00000454018 SH3BP5LQ7L8J4 393 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 CDAN1Q8IWY9 1227 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 SPIRE2Q8WWL2 714 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 ANO2Q9NQ90 1003 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 SERPINB13Q9UIV8 391 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 USP17L12C9JPN9 530 aa10.42□□□□□ -0.74
SYNE1-214ENST00000454018 USP17L21D6R901 530 aa10.42□□□□□ -0.74
SYNE1-214ENST00000454018 EPB41L2O43491 1005 aaKnown RBP10.42□□□□□ -0.74
SYNE1-214ENST00000454018 FKBP1BP68106 108 aa10.42□□□□□ -0.74
SYNE1-214ENST00000454018 C12orf60Q5U649 245 aa10.42□□□□□ -0.74
SYNE1-214ENST00000454018 CTR9Q6PD62 1173 aa10.42□□□□□ -0.74
SYNE1-214ENST00000454018 CRACR2BQ8N4Y2 399 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-214ENST00000454018 TRIM34Q9BYJ4 488 aa10.42□□□□□ -0.74
SYNE1-214ENST00000454018 LSG1Q9H089 658 aaKnown RBP10.42□□□□□ -0.74
SYNE1-214ENST00000454018 CTNNA3Q9UI47 895 aa10.42□□□□□ -0.74
SYNE1-214ENST00000454018 PPP1R12BO60237 982 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-214ENST00000454018 FGAP02671 866 aa10.41□□□□□ -0.74
SYNE1-214ENST00000454018 SLC3A2P08195 630 aaKnown RBP10.41□□□□□ -0.74
SYNE1-214ENST00000454018 PPARAQ07869 468 aa10.41□□□□□ -0.74
SYNE1-214ENST00000454018 SLC4A8Q2Y0W8 1093 aa10.41□□□□□ -0.74
SYNE1-214ENST00000454018 C8orf34Q49A92 452 aa10.41□□□□□ -0.74
SYNE1-214ENST00000454018 PRAMEF18Q5VWM3 479 aa10.41□□□□□ -0.74
SYNE1-214ENST00000454018 METTL16Q86W50 562 aaKnown RBP10.41□□□□□ -0.74
SYNE1-214ENST00000454018 FOXP4Q8IVH2 680 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-214ENST00000454018 TTC13Q8NBP0 860 aa10.41□□□□□ -0.74
SYNE1-214ENST00000454018 MAP4K1Q92918 833 aa10.41□□□□□ -0.74
SYNE1-214ENST00000454018 SWAP70Q9UH65 585 aa10.41□□□□□ -0.74
SYNE1-214ENST00000454018 LOC285556D6RIA3 1793 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 MINDY4BA8MYZ0 360 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 HAX1O00165 279 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 CELF2O95319 508 aaKnown RBP10.4□□□□□ -0.74
SYNE1-214ENST00000454018 CYP2D6P10635 497 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 IREB2P48200 963 aaKnown RBP10.4□□□□□ -0.74
SYNE1-214ENST00000454018 PLCD1P51178 756 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 MAP3K10Q02779 954 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 PTH1RQ03431 593 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 GABPAQ06546 454 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 MAP3K11Q16584 847 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 IMMTQ16891 758 aaKnown RBP10.4□□□□□ -0.74
SYNE1-214ENST00000454018 C16orf86Q6ZW13 317 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 ZNF341Q9BYN7 854 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 DNAJC18Q9H819 358 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 ZNF408Q9H9D4 720 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.4□□□□□ -0.74
SYNE1-214ENST00000454018 ZNF287Q9HBT7 754 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 GBA2Q9HCG7 927 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-214ENST00000454018 ANAPC4Q9UJX5 808 aa10.4□□□□□ -0.74
SYNE1-214ENST00000454018 RBM8AQ9Y5S9 174 aaKnown RBP10.4□□□□□ -0.74
SYNE1-214ENST00000454018 CYP2D7A0A087X1C5 515 aa10.39□□□□□ -0.75
SYNE1-214ENST00000454018 PCP11498 1178 aaKnown RBP10.39□□□□□ -0.75
SYNE1-214ENST00000454018 PDE4BQ07343 736 aa10.39□□□□□ -0.75
SYNE1-214ENST00000454018 DLK2Q6UY11 383 aa10.39□□□□□ -0.75
SYNE1-214ENST00000454018 ARMC9Q7Z3E5 817 aa10.39□□□□□ -0.75
SYNE1-214ENST00000454018 THSD7BQ9C0I4 1608 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 UNCXA6NJT0 531 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 FAM196BA6NMK8 535 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 ZNF213O14771 459 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 SPTLC1O15269 473 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 NT5C2P49902 561 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 FMR1Q06787 632 aaKnown RBP eCLIP10.38□□□□□ -0.75
SYNE1-214ENST00000454018 CSPP1Q1MSJ5 1256 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 RNF20Q5VTR2 975 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 MIGA2Q7L4E1 593 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 C2orf69Q8N8R5 385 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.38□□□□□ -0.75
SYNE1-214ENST00000454018 KLRG1Q96E93 195 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 WRNIP1Q96S55 665 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 RNF41Q9H4P4 317 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-214ENST00000454018 ANGEL1Q9UNK9 670 aaKnown RBP10.38□□□□□ -0.75
SYNE1-214ENST00000454018 COLQQ9Y215 455 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-214ENST00000454018 PLIN4Q96Q06 1357 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 PARP14Q460N5 1801 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 TMEM88BA6NKF7 163 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 SHMT1P34896 483 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 HAND2P61296 217 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 EVX2Q03828 476 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 QPCTQ16769 361 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 TUSC1Q2TAM9 212 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 C6orf132Q5T0Z8 1188 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 CST9Q5W186 159 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 TATDN1Q6P1N9 297 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 STAG1Q8WVM7 1258 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 DYNLL2Q96FJ2 89 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 GINM1Q9NU53 330 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 ZNF112Q9UJU3 913 aa10.38□□□□□ -0.75
SYNE1-214ENST00000454018 PHF20L1A8MW92 1017 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 ORC4O43929 436 aa10.37□□□□□ -0.75
SYNE1-214ENST00000454018 CTNND1O60716 968 aaKnown RBP10.37□□□□□ -0.75
SYNE1-214ENST00000454018 USP2O75604 605 aaPredicted RBP10.37□□□□□ -0.75
SYNE1-214ENST00000454018 CYP21A2P08686 494 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms