RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 HSPA12BQ96MM6 686 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 ADAM30Q9UKF2 790 aa6.59□□□□□ -1.35
USP40-209ENST00000452724 PF4P02776 101 aa6.58□□□□□ -1.36
USP40-209ENST00000452724 AFMP43652 599 aa6.58□□□□□ -1.36
USP40-209ENST00000452724 ZNF394Q53GI3 561 aa6.58□□□□□ -1.36
USP40-209ENST00000452724 JARID2Q92833 1246 aaPredicted RBP6.58□□□□□ -1.36
USP40-209ENST00000452724 TMEM87BQ96K49 555 aa6.58□□□□□ -1.36
USP40-209ENST00000452724 PRDM7Q9NQW5 492 aa6.58□□□□□ -1.36
USP40-209ENST00000452724 IGSF5Q9NSI5 407 aa6.58□□□□□ -1.36
USP40-209ENST00000452724 FAM53CQ9NYF3 392 aa6.58□□□□□ -1.36
USP40-209ENST00000452724 PCDHGB7Q9Y5F8 929 aa6.58□□□□□ -1.36
USP40-209ENST00000452724 CAPN6Q9Y6Q1 641 aa6.58□□□□□ -1.36
USP40-209ENST00000452724 H3BS24 57 aa6.57□□□□□ -1.36
USP40-209ENST00000452724 FARP2O94887 1054 aaPredicted RBP6.57□□□□□ -1.36
USP40-209ENST00000452724 EIF4A3P38919 411 aaKnown RBP6.57□□□□□ -1.36
USP40-209ENST00000452724 FAM160A1Q05DH4 1040 aa6.57□□□□□ -1.36
USP40-209ENST00000452724 PKN1Q16512 942 aa6.57□□□□□ -1.36
USP40-209ENST00000452724 KCNMB1Q16558 191 aa6.57□□□□□ -1.36
USP40-209ENST00000452724 SNAP47Q5SQN1 464 aa6.57□□□□□ -1.36
USP40-209ENST00000452724 ZSWIM9Q86XI8 627 aa6.57□□□□□ -1.36
USP40-209ENST00000452724 CARS2Q9HA77 564 aaKnown RBP6.57□□□□□ -1.36
USP40-209ENST00000452724 ATP13A1Q9HD20 1204 aa6.57□□□□□ -1.36
USP40-209ENST00000452724 TJP2Q9UDY2 1190 aa6.57□□□□□ -1.36
USP40-209ENST00000452724 DDX41Q9UJV9 622 aaKnown RBP6.57□□□□□ -1.36
USP40-209ENST00000452724 CARMIL2Q6F5E8 1435 aa6.57□□□□□ -1.36
USP40-209ENST00000452724 PRR33A8MZF0 331 aa6.56□□□□□ -1.36
USP40-209ENST00000452724 C8AP07357 584 aa6.56□□□□□ -1.36
USP40-209ENST00000452724 BNC2Q6ZN30 1099 aaPredicted RBP6.56□□□□□ -1.36
USP40-209ENST00000452724 CDH24Q86UP0 819 aa6.56□□□□□ -1.36
USP40-209ENST00000452724 MCATQ8IVS2 390 aaKnown RBP6.56□□□□□ -1.36
USP40-209ENST00000452724 GOLM1Q8NBJ4 401 aa6.56□□□□□ -1.36
USP40-209ENST00000452724 RIN3Q8TB24 985 aa6.56□□□□□ -1.36
USP40-209ENST00000452724 PIWIL2Q8TC59 973 aaKnown RBP6.56□□□□□ -1.36
USP40-209ENST00000452724 DPH2Q9BQC3 489 aaPredicted RBP6.56□□□□□ -1.36
USP40-209ENST00000452724 SEMA3GQ9NS98 782 aa6.56□□□□□ -1.36
USP40-209ENST00000452724 ADAMTS1Q9UHI8 967 aa6.56□□□□□ -1.36
USP40-209ENST00000452724 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.56□□□□□ -1.36
USP40-209ENST00000452724 F13A1P00488 732 aa6.55□□□□□ -1.36
USP40-209ENST00000452724 GARTP22102 1010 aa6.55□□□□□ -1.36
USP40-209ENST00000452724 YARSP54577 528 aaKnown RBP6.55□□□□□ -1.36
USP40-209ENST00000452724 RACK1P63244 317 aaKnown RBP6.55□□□□□ -1.36
USP40-209ENST00000452724 FBXL19Q6PCT2 694 aa6.55□□□□□ -1.36
USP40-209ENST00000452724 ZNF654Q8IZM8 581 aa6.55□□□□□ -1.36
USP40-209ENST00000452724 ZNF296Q8WUU4 475 aaPredicted RBP6.55□□□□□ -1.36
USP40-209ENST00000452724 SLC38A3Q99624 504 aa6.55□□□□□ -1.36
USP40-209ENST00000452724 KCNQ5Q9NR82 932 aa6.55□□□□□ -1.36
USP40-209ENST00000452724 ZSWIM5Q9P217 1185 aa6.55□□□□□ -1.36
USP40-209ENST00000452724 CTNND2Q9UQB3 1225 aa6.55□□□□□ -1.36
USP40-209ENST00000452724 SUPT16HQ9Y5B9 1047 aaKnown RBP6.55□□□□□ -1.36
USP40-209ENST00000452724 ST14Q9Y5Y6 855 aa6.55□□□□□ -1.36
USP40-209ENST00000452724 FAM221AA4D161 298 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 PLCG1P19174 1290 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 ERCC5P28715 1186 aaPredicted RBP6.54□□□□□ -1.36
USP40-209ENST00000452724 RAD51AP2Q09MP3 1159 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 TMPRSS7Q7RTY8 843 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 KIAA0825Q8IV33 1275 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 KSR1Q8IVT5 923 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 GATAD2BQ8WXI9 593 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 UBE2FQ969M7 185 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 SPON2Q9BUD6 331 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 TGIF2Q9GZN2 237 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 TRIT1Q9H3H1 467 aaKnown RBP6.54□□□□□ -1.36
USP40-209ENST00000452724 CEP131Q9UPN4 1083 aa6.54□□□□□ -1.36
USP40-209ENST00000452724 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.54□□□□□ -1.36
USP40-209ENST00000452724 CNTNAP4Q9C0A0 1308 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 LRRC10BA6NIK2 292 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 GREM1O60565 184 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 CILPO75339 1184 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 GDNFP39905 211 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 FZD5Q13467 585 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 ZNF648Q5T619 568 aaPredicted RBP6.53□□□□□ -1.36
USP40-209ENST00000452724 FAM196AQ6ZSG2 479 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 FAM13CQ8NE31 585 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 CYB5D2Q8WUJ1 264 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 ACSF2Q96CM8 615 aaPredicted RBP6.53□□□□□ -1.36
USP40-209ENST00000452724 KIRREL1Q96J84 757 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 CCSER2Q9H7U1 834 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 KCNH3Q9ULD8 1083 aa6.53□□□□□ -1.36
USP40-209ENST00000452724 RAC2P15153 192 aa6.52□□□□□ -1.37
USP40-209ENST00000452724 CHMP4BP1P59074 171 aa6.52□□□□□ -1.37
USP40-209ENST00000452724 TNK2Q07912 1038 aa6.52□□□□□ -1.37
USP40-209ENST00000452724 TMEM201Q5SNT2 666 aa6.52□□□□□ -1.37
USP40-209ENST00000452724 ALPK1Q96QP1 1244 aa6.52□□□□□ -1.37
USP40-209ENST00000452724 TLR3O15455 904 aaKnown RBP6.51□□□□□ -1.37
USP40-209ENST00000452724 GLI1P08151 1106 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 TNNI2P48788 182 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 MLECQ14165 292 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 MPP2Q14168 576 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 TMEM67Q5HYA8 995 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 MPZL3Q6UWV2 235 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 DNAJB8Q8NHS0 232 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 FBXO27Q8NI29 283 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 FAM84AQ96KN4 292 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 LRRC3Q9BY71 257 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 ACBD3Q9H3P7 528 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 GPATCH2Q9NW75 528 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 SLAMF8Q9P0V8 285 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 CORINQ9Y5Q5 1042 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 ROBO2Q9HCK4 1378 aa6.51□□□□□ -1.37
USP40-209ENST00000452724 CRKP46108 304 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms