RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 DIAPH3Q9NSV4 1193 aa23.82■■□□□ 1.4
COL9A3-202ENST00000452372 PTPRFP10586 1907 aa23.82■■□□□ 1.4
COL9A3-202ENST00000452372 A0A0G2JLL6 359 aaPredicted RBP23.81■■□□□ 1.4
COL9A3-202ENST00000452372 MINDY4BA8MYZ0 360 aa23.81■■□□□ 1.4
COL9A3-202ENST00000452372 FOXP2O15409 715 aa23.81■■□□□ 1.4
COL9A3-202ENST00000452372 SPP2Q13103 211 aa23.81■■□□□ 1.4
COL9A3-202ENST00000452372 VPS53Q5VIR6 699 aa23.81■■□□□ 1.4
COL9A3-202ENST00000452372 PRRT2Q7Z6L0 340 aaPredicted RBP23.81■■□□□ 1.4
COL9A3-202ENST00000452372 NAPBQ9H115 298 aa23.81■■□□□ 1.4
COL9A3-202ENST00000452372 CABP5Q9NP86 173 aa23.81■■□□□ 1.4
COL9A3-202ENST00000452372 PPP4R2Q9NY27 417 aa23.81■■□□□ 1.4
COL9A3-202ENST00000452372 MYH8P13535 1937 aa23.8■■□□□ 1.4
COL9A3-202ENST00000452372 TRIM75PA6NK02 468 aa23.8■■□□□ 1.4
COL9A3-202ENST00000452372 PRPF38BQ5VTL8 546 aaKnown RBP23.8■■□□□ 1.4
COL9A3-202ENST00000452372 CWC27Q6UX04 472 aaKnown RBP23.8■■□□□ 1.4
COL9A3-202ENST00000452372 FASTKD5Q7L8L6 764 aaKnown RBP23.8■■□□□ 1.4
COL9A3-202ENST00000452372 ZNF589Q86UQ0 364 aaPredicted RBP23.8■■□□□ 1.4
COL9A3-202ENST00000452372 TRIM47Q96LD4 638 aa23.8■■□□□ 1.4
COL9A3-202ENST00000452372 CCDC171Q6TFL3 1326 aa23.8■■□□□ 1.4
COL9A3-202ENST00000452372 CYP2C8P10632 490 aa23.79■■□□□ 1.4
COL9A3-202ENST00000452372 BCRP11274 1271 aa23.79■■□□□ 1.4
COL9A3-202ENST00000452372 MFAP1P55081 439 aaKnown RBP23.79■■□□□ 1.4
COL9A3-202ENST00000452372 ALX1Q15699 326 aa23.79■■□□□ 1.4
COL9A3-202ENST00000452372 ROBO3Q96MS0 1386 aa23.78■■□□□ 1.4
COL9A3-202ENST00000452372 ECM2O94769 699 aaPredicted RBP23.78■■□□□ 1.4
COL9A3-202ENST00000452372 GNRH1P01148 92 aa23.78■■□□□ 1.4
COL9A3-202ENST00000452372 HSPD1P10809 573 aaKnown RBP23.78■■□□□ 1.4
COL9A3-202ENST00000452372 KIF22Q14807 665 aa23.78■■□□□ 1.4
COL9A3-202ENST00000452372 SLC9C1Q4G0N8 1177 aa23.78■■□□□ 1.4
COL9A3-202ENST00000452372 SKAP1Q86WV1 359 aa23.78■■□□□ 1.4
COL9A3-202ENST00000452372 CCDC17Q96LX7 622 aa23.78■■□□□ 1.4
COL9A3-202ENST00000452372 PSMC4P43686 418 aa23.77■■□□□ 1.4
COL9A3-202ENST00000452372 BACE1P56817 501 aa23.77■■□□□ 1.4
COL9A3-202ENST00000452372 RAB3GAP1Q15042 981 aa23.77■■□□□ 1.4
COL9A3-202ENST00000452372 SH3D19Q5HYK7 790 aa23.77■■□□□ 1.4
COL9A3-202ENST00000452372 SH3TC2Q8TF17 1288 aa23.77■■□□□ 1.4
COL9A3-202ENST00000452372 MPHOSPH10O00566 681 aaKnown RBP23.76■■□□□ 1.39
COL9A3-202ENST00000452372 GUCY1A2P33402 732 aa23.76■■□□□ 1.39
COL9A3-202ENST00000452372 GADL1Q6ZQY3 521 aa23.76■■□□□ 1.39
COL9A3-202ENST00000452372 NBPF11Q86T75 865 aa23.76■■□□□ 1.39
COL9A3-202ENST00000452372 SRRDQ9UH36 339 aa23.76■■□□□ 1.39
COL9A3-202ENST00000452372 C19orf81C9J6K1 198 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 USP17L10C9JJH3 530 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 FGAP02671 866 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 AKR1B1P15121 316 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 OSBPP22059 807 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 CHMLP26374 656 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 PRMT2P55345 433 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 PPARAQ07869 468 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 SEPT2Q15019 361 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 TMEM179Q6ZVK1 233 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 PROCA1Q8NCQ7 364 aaPredicted RBP23.75■■□□□ 1.39
COL9A3-202ENST00000452372 PARK7Q99497 189 aaKnown RBP23.75■■□□□ 1.39
COL9A3-202ENST00000452372 MKNK2Q9HBH9 465 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 ZNF287Q9HBT7 754 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 SLC45A1Q9Y2W3 748 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 DOCK3Q8IZD9 2030 aa23.75■■□□□ 1.39
COL9A3-202ENST00000452372 SLC3A2P08195 630 aaKnown RBP23.74■■□□□ 1.39
COL9A3-202ENST00000452372 HMGCS2P54868 508 aa23.74■■□□□ 1.39
COL9A3-202ENST00000452372 STK11IPQ8N1F8 1099 aa23.74■■□□□ 1.39
COL9A3-202ENST00000452372 ZMYM6O95789 1325 aa23.74■■□□□ 1.39
COL9A3-202ENST00000452372 MGAMO43451 1857 aa23.74■■□□□ 1.39
COL9A3-202ENST00000452372 RASA1P20936 1047 aa23.73■■□□□ 1.39
COL9A3-202ENST00000452372 MTMR2Q13614 643 aa23.73■■□□□ 1.39
COL9A3-202ENST00000452372 TMEM106CQ9BVX2 250 aa23.73■■□□□ 1.39
COL9A3-202ENST00000452372 ANAPC4Q9UJX5 808 aa23.73■■□□□ 1.39
COL9A3-202ENST00000452372 AGTPBP1Q9UPW5 1226 aa23.73■■□□□ 1.39
COL9A3-202ENST00000452372 FMNL1O95466 1100 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-202ENST00000452372 MYCP01106 439 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-202ENST00000452372 PDE4BQ07343 736 aa23.72■■□□□ 1.39
COL9A3-202ENST00000452372 BMP2KLQ5H9B9 411 aa23.72■■□□□ 1.39
COL9A3-202ENST00000452372 RUFY2Q8WXA3 655 aa23.72■■□□□ 1.39
COL9A3-202ENST00000452372 LOC285556D6RIA3 1793 aa23.71■■□□□ 1.39
COL9A3-202ENST00000452372 RAD50Q92878 1312 aa23.71■■□□□ 1.39
COL9A3-202ENST00000452372 TREML2Q5T2D2 321 aa23.71■■□□□ 1.39
COL9A3-202ENST00000452372 ZNF444Q8N0Y2 327 aaPredicted RBP23.71■■□□□ 1.39
COL9A3-202ENST00000452372 ACER1Q8TDN7 264 aa23.71■■□□□ 1.39
COL9A3-202ENST00000452372 TMOD4Q9NZQ9 345 aa23.71■■□□□ 1.39
COL9A3-202ENST00000452372 CEP290O15078 2479 aa23.7■■□□□ 1.38
COL9A3-202ENST00000452372 PRDM1O75626 825 aa23.7■■□□□ 1.38
COL9A3-202ENST00000452372 MTFR1Q15390 333 aa23.7■■□□□ 1.38
COL9A3-202ENST00000452372 USP17L2Q6R6M4 530 aa23.7■■□□□ 1.38
COL9A3-202ENST00000452372 DSCC1Q9BVC3 393 aa23.7■■□□□ 1.38
COL9A3-202ENST00000452372 KIAA1683Q9H0B3 1180 aa23.7■■□□□ 1.38
COL9A3-202ENST00000452372 IL25Q9H293 177 aa23.7■■□□□ 1.38
COL9A3-202ENST00000452372 EMILIN3Q9NT22 766 aa23.7■■□□□ 1.38
COL9A3-202ENST00000452372 HOXD10P28358 340 aa23.69■■□□□ 1.38
COL9A3-202ENST00000452372 USP14P54578 494 aa23.69■■□□□ 1.38
COL9A3-202ENST00000452372 CTDSPL2Q05D32 466 aa23.69■■□□□ 1.38
COL9A3-202ENST00000452372 PABPC4Q13310 644 aaKnown RBP eCLIP23.69■■□□□ 1.38
COL9A3-202ENST00000452372 SIAH1Q8IUQ4 282 aa23.69■■□□□ 1.38
COL9A3-202ENST00000452372 C12orf42Q96LP6 360 aa23.69■■□□□ 1.38
COL9A3-202ENST00000452372 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.69■■□□□ 1.38
COL9A3-202ENST00000452372 KANSL2Q9H9L4 492 aa23.69■■□□□ 1.38
COL9A3-202ENST00000452372 GABRQQ9UN88 632 aa23.69■■□□□ 1.38
COL9A3-202ENST00000452372 A0A1W2PRG0 241 aa23.68■■□□□ 1.38
COL9A3-202ENST00000452372 ICA1Q05084 483 aa23.68■■□□□ 1.38
COL9A3-202ENST00000452372 PRKCZQ05513 592 aa23.68■■□□□ 1.38
COL9A3-202ENST00000452372 FEZ1Q99689 392 aa23.68■■□□□ 1.38
COL9A3-202ENST00000452372 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms