RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 EVX2Q03828 476 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 TMEM179Q6ZVK1 233 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 ACER1Q8TDN7 264 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 OSBP2Q969R2 916 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 CCDC17Q96LX7 622 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 STRBPQ96SI9 672 aaKnown RBP18.6■□□□□ 0.57
LIMS1-210ENST00000449684 KIAA1683Q9H0B3 1180 aa18.6■□□□□ 0.57
LIMS1-210ENST00000449684 ARPP21Q9UBL0 812 aaPredicted RBP18.6■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L15C9J2P7 530 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L13C9JLJ4 530 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L11C9JVI0 530 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L18D6R9N7 530 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L22D6RA61 530 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L17D6RBQ6 530 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L19D6RCP7 530 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L20D6RJB6 530 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 CDK8P49336 464 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 FLT3LGP49771 235 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 USP17L24Q0WX57 530 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 SLAIN1Q8ND83 568 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 GPRC5AQ8NFJ5 357 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 PI4K2BQ8TCG2 481 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 GTF3C2Q8WUA4 911 aaPredicted RBP18.59■□□□□ 0.57
LIMS1-210ENST00000449684 CWC22Q9HCG8 908 aaKnown RBP18.59■□□□□ 0.57
LIMS1-210ENST00000449684 GABRQQ9UN88 632 aa18.59■□□□□ 0.57
LIMS1-210ENST00000449684 DDX60LQ5H9U9 1706 aaKnown RBP18.59■□□□□ 0.57
LIMS1-210ENST00000449684 BAZ2AQ9UIF9 1905 aaKnown RBP18.59■□□□□ 0.57
LIMS1-210ENST00000449684 MINDY4BA8MYZ0 360 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 GPAA1O43292 621 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 ADCY3O60266 1144 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 TDO2P48775 406 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 CTR9Q6PD62 1173 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 EXOC6Q8TAG9 804 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 C12orf42Q96LP6 360 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 PAGR1Q9BTK6 254 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 ARHGEF10LQ9HCE6 1279 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 SUPT16HQ9Y5B9 1047 aaKnown RBP18.58■□□□□ 0.56
LIMS1-210ENST00000449684 MGAMO43451 1857 aa18.58■□□□□ 0.56
LIMS1-210ENST00000449684 HTTP42858 3142 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 EN2P19622 333 aaPredicted RBP18.57■□□□□ 0.56
LIMS1-210ENST00000449684 GUCY1A2P33402 732 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 ATP2B2Q01814 1243 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 B4GALNT3Q6L9W6 998 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 GIMAP6Q6P9H5 292 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 C16orf86Q6ZW13 317 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 NACAP1Q9BZK3 213 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 SH2D4AQ9H788 454 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 MKNK2Q9HBH9 465 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 MORF4L1Q9UBU8 362 aa18.57■□□□□ 0.56
LIMS1-210ENST00000449684 KIAA0100Q14667 2235 aaKnown RBP18.56■□□□□ 0.56
LIMS1-210ENST00000449684 GSG1L2A8MUP6 293 aa18.56■□□□□ 0.56
LIMS1-210ENST00000449684 M0R2C6 588 aa18.56■□□□□ 0.56
LIMS1-210ENST00000449684 AKR1B1P15121 316 aa18.56■□□□□ 0.56
LIMS1-210ENST00000449684 VCAM1P19320 739 aa18.56■□□□□ 0.56
LIMS1-210ENST00000449684 ICA1Q05084 483 aa18.56■□□□□ 0.56
LIMS1-210ENST00000449684 STK11IPQ8N1F8 1099 aa18.56■□□□□ 0.56
LIMS1-210ENST00000449684 LNPKQ9C0E8 428 aa18.56■□□□□ 0.56
LIMS1-210ENST00000449684 RPAP3Q9H6T3 665 aaPredicted RBP18.56■□□□□ 0.56
LIMS1-210ENST00000449684 MYH8P13535 1937 aa18.55■□□□□ 0.56
LIMS1-210ENST00000449684 PATL2C9JE40 543 aaKnown RBP18.55■□□□□ 0.56
LIMS1-210ENST00000449684 IRF5Q13568 498 aa18.55■□□□□ 0.56
LIMS1-210ENST00000449684 SBK1Q52WX2 424 aa18.55■□□□□ 0.56
LIMS1-210ENST00000449684 CATSPERGQ6ZRH7 1159 aa18.55■□□□□ 0.56
LIMS1-210ENST00000449684 TANGO6Q9C0B7 1094 aa18.55■□□□□ 0.56
LIMS1-210ENST00000449684 ZNF287Q9HBT7 754 aa18.55■□□□□ 0.56
LIMS1-210ENST00000449684 ELNP15502 786 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 PDE1AP54750 535 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 ERVK-9P63128 1117 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 ERVK-24P63145 666 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 MTFR1Q15390 333 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 PXYLP1Q8TE99 480 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 EVI5LQ96CN4 794 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 SEC62Q99442 399 aaKnown RBP18.54■□□□□ 0.56
LIMS1-210ENST00000449684 RNF208Q9H0X6 261 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 RBPJLQ9UBG7 517 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 STAP2Q9UGK3 403 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 RABGAP1Q9Y3P9 1069 aa18.54■□□□□ 0.56
LIMS1-210ENST00000449684 SALL3Q9BXA9 1300 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 A0A1W2PRG0 241 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 TRIM6-TRIM34B2RNG4 842 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 SMIM22K7EJ46 135 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 RAD21O60216 631 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 CCL5P13501 91 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 MAPK4P31152 587 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 CENPFP49454 3210 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 CCNA1P78396 465 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 WDR78Q5VTH9 848 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 ZNF444Q8N0Y2 327 aaPredicted RBP18.53■□□□□ 0.56
LIMS1-210ENST00000449684 NKX2-3Q8TAU0 364 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 NAPBQ9H115 298 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 KANSL2Q9H9L4 492 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 TXNRD2Q9NNW7 524 aa18.53■□□□□ 0.56
LIMS1-210ENST00000449684 PEX10O60683 326 aa18.52■□□□□ 0.56
LIMS1-210ENST00000449684 SLC3A2P08195 630 aaKnown RBP18.52■□□□□ 0.56
LIMS1-210ENST00000449684 ZMYM1Q5SVZ6 1142 aa18.52■□□□□ 0.56
LIMS1-210ENST00000449684 SMC5Q8IY18 1101 aa18.52■□□□□ 0.56
LIMS1-210ENST00000449684 IFNL3Q8IZI9 196 aa18.52■□□□□ 0.56
LIMS1-210ENST00000449684 LPAR1Q92633 364 aa18.52■□□□□ 0.56
LIMS1-210ENST00000449684 NUDT12Q9BQG2 462 aa18.52■□□□□ 0.56
LIMS1-210ENST00000449684 HOXC10Q9NYD6 342 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms