RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 HHIPL2Q6UWX4 724 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 DGKHQ86XP1 1220 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 ZNF444Q8N0Y2 327 aaPredicted RBP12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 MRIQ9BWK5 157 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 RNF26Q9BY78 433 aaPredicted RBP12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 FAM117AQ9C073 453 aa12.26□□□□□ -0.45
VIPAS39-203ENST00000448935 C10orf71Q711Q0 1435 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 SYCE3A1L190 88 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 CYP2D6P10635 497 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 RHBDL3P58872 404 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 GNL2Q13823 731 aaKnown RBP12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 DSG2Q14126 1118 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 SAFBQ15424 915 aaKnown RBP eCLIP12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 DOK7Q18PE1 504 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 MAPKAPK5Q8IW41 473 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 CRACR2BQ8N4Y2 399 aaPredicted RBP12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 CTCFLQ8NI51 663 aaPredicted RBP12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 ANP32BQ92688 251 aaKnown RBP12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 PHKBQ93100 1093 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 MAP3K14Q99558 947 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 TCP11L1Q9NUJ3 509 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 TTF2Q9UNY4 1162 aaKnown RBP12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 DAGLAQ9Y4D2 1042 aa12.25□□□□□ -0.45
VIPAS39-203ENST00000448935 PPFIA3O75145 1194 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 YEATS4O95619 227 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 XRCC6P12956 609 aaKnown RBP eCLIP12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 KIF5BP33176 963 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 HDLBPQ00341 1268 aaKnown RBP12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 TFAP4Q01664 338 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 KIF23Q02241 960 aaPredicted RBP12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 STRIP1Q5VSL9 837 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 KRT40Q6A162 431 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 GAS2L3Q86XJ1 694 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 ANKS1AQ92625 1134 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 TEKT1Q969V4 418 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 KAT14Q9H8E8 782 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 DDX19AQ9NUU7 478 aaKnown RBP12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 RTEL1Q9NZ71 1219 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 FLT1P17948 1338 aa12.24□□□□□ -0.45
VIPAS39-203ENST00000448935 TSPY3P0CV98 308 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 TSPY8P0CW00 308 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 CHRNA5P30532 468 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 TROAPQ12815 778 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 MYSM1Q5VVJ2 828 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 OLFM4Q6UX06 510 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 C16orf86Q6ZW13 317 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 NBPF11Q86T75 865 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 PIP4P2Q8N4L2 257 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 BICD2Q8TD16 824 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 KCNG4Q8TDN1 519 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 TSPY26PQ9H489 355 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 POLR3EQ9NVU0 708 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 TRPC6Q9Y210 931 aa12.23□□□□□ -0.45
VIPAS39-203ENST00000448935 SMIM22K7EJ46 135 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 PRPF3O43395 683 aaKnown RBP12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 GNAQP50148 359 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 KIAA2012Q0VF49 1180 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 FAM47AQ5JRC9 791 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 OTUD7BQ6GQQ9 843 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 RTKN2Q8IZC4 609 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 C7orf43Q8WVR3 580 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 USP28Q96RU2 1077 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 ECE2O60344 883 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 U2AF2P26368 475 aaKnown RBP eCLIP12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 NASPP49321 788 aaPredicted RBP12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 STK38Q15208 465 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 SF3A1Q15459 793 aaKnown RBP12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 CCDC93Q567U6 631 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 DEFB132Q7Z7B7 95 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 CERS5Q8N5B7 392 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 TTLL6Q8N841 843 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 NUP62CLQ9H1M0 184 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 VPS33BQ9H267 617 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 FOXP1Q9H334 677 aaPredicted RBP12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 DBNDD1Q9H9R9 158 aa12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 SAP30BPQ9UHR5 308 aaKnown RBP12.22□□□□□ -0.45
VIPAS39-203ENST00000448935 KIF13BQ9NQT8 1826 aa12.21□□□□□ -0.45
VIPAS39-203ENST00000448935 USP17L3A6NCW0 530 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 USP17L4A6NCW7 530 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 F8W031 263 aaPredicted RBP12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 MMP1P03956 469 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 CDK8P49336 464 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 PLCD1P51178 756 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 MAP2K5Q13163 448 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 SOGA3Q5TF21 947 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 TMTC3Q6ZXV5 915 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 USP17L1Q7RTZ2 530 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 JMYQ8N9B5 988 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 DYNLL2Q96FJ2 89 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 USP40Q9NVE5 1235 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 SWAP70Q9UH65 585 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 MYO3BQ8WXR4 1341 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 MYH8P13535 1937 aa12.21□□□□□ -0.46
VIPAS39-203ENST00000448935 SNED1Q8TER0 1413 aa12.2□□□□□ -0.46
VIPAS39-203ENST00000448935 HLA-DOAP06340 250 aa12.2□□□□□ -0.46
VIPAS39-203ENST00000448935 RASA1P20936 1047 aa12.2□□□□□ -0.46
VIPAS39-203ENST00000448935 ME1P48163 572 aa12.2□□□□□ -0.46
VIPAS39-203ENST00000448935 FOXK1P85037 733 aa12.2□□□□□ -0.46
VIPAS39-203ENST00000448935 CEBPZQ03701 1054 aaKnown RBP12.2□□□□□ -0.46
VIPAS39-203ENST00000448935 PPP4R3BQ5MIZ7 849 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms