RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 PRPF38BQ5VTL8 546 aaKnown RBP20.39■□□□□ 0.85
LIME1-202ENST00000444951 RNF20Q5VTR2 975 aa20.39■□□□□ 0.85
LIME1-202ENST00000444951 EHD4Q9H223 541 aa20.39■□□□□ 0.85
LIME1-202ENST00000444951 MKNK2Q9HBH9 465 aa20.39■□□□□ 0.85
LIME1-202ENST00000444951 ANAPC4Q9UJX5 808 aa20.39■□□□□ 0.85
LIME1-202ENST00000444951 PTCH2Q9Y6C5 1203 aa20.39■□□□□ 0.85
LIME1-202ENST00000444951 LAMA4Q16363 1823 aa20.39■□□□□ 0.85
LIME1-202ENST00000444951 TLR2O60603 784 aa20.38■□□□□ 0.85
LIME1-202ENST00000444951 HSPA4P34932 840 aa20.38■□□□□ 0.85
LIME1-202ENST00000444951 CDK8P49336 464 aa20.38■□□□□ 0.85
LIME1-202ENST00000444951 PPATQ06203 517 aa20.38■□□□□ 0.85
LIME1-202ENST00000444951 MOGSQ13724 837 aa20.38■□□□□ 0.85
LIME1-202ENST00000444951 MFSD6Q6ZSS7 791 aa20.38■□□□□ 0.85
LIME1-202ENST00000444951 C16orf86Q6ZW13 317 aa20.38■□□□□ 0.85
LIME1-202ENST00000444951 DNAJC18Q9H819 358 aa20.38■□□□□ 0.85
LIME1-202ENST00000444951 HERC5Q9UII4 1024 aaKnown RBP20.38■□□□□ 0.85
LIME1-202ENST00000444951 TACC3Q9Y6A5 838 aa20.38■□□□□ 0.85
LIME1-202ENST00000444951 ECM2O94769 699 aaPredicted RBP20.37■□□□□ 0.85
LIME1-202ENST00000444951 PDE4BQ07343 736 aa20.37■□□□□ 0.85
LIME1-202ENST00000444951 AKNAD1Q5T1N1 836 aa20.37■□□□□ 0.85
LIME1-202ENST00000444951 RASEFQ8IZ41 740 aa20.37■□□□□ 0.85
LIME1-202ENST00000444951 ROBO3Q96MS0 1386 aa20.36■□□□□ 0.85
LIME1-202ENST00000444951 NEDD4P46934 1319 aa20.36■□□□□ 0.85
LIME1-202ENST00000444951 ZKSCAN1P17029 563 aaPredicted RBP20.36■□□□□ 0.85
LIME1-202ENST00000444951 EN2P19622 333 aaPredicted RBP20.36■□□□□ 0.85
LIME1-202ENST00000444951 CTGFP29279 349 aa20.36■□□□□ 0.85
LIME1-202ENST00000444951 SHMT1P34896 483 aa20.36■□□□□ 0.85
LIME1-202ENST00000444951 GABPAQ06546 454 aa20.36■□□□□ 0.85
LIME1-202ENST00000444951 NOL9Q5SY16 702 aaKnown RBP20.36■□□□□ 0.85
LIME1-202ENST00000444951 ZCCHC17Q9NP64 241 aaKnown RBP20.36■□□□□ 0.85
LIME1-202ENST00000444951 SWAP70Q9UH65 585 aa20.36■□□□□ 0.85
LIME1-202ENST00000444951 KCNH4Q9UQ05 1017 aa20.36■□□□□ 0.85
LIME1-202ENST00000444951 PHF20L1A8MW92 1017 aa20.35■□□□□ 0.85
LIME1-202ENST00000444951 E7EWF7 191 aa20.35■□□□□ 0.85
LIME1-202ENST00000444951 MPHOSPH10O00566 681 aaKnown RBP20.35■□□□□ 0.85
LIME1-202ENST00000444951 EPB41L2O43491 1005 aaKnown RBP20.35■□□□□ 0.85
LIME1-202ENST00000444951 GDF11O95390 407 aa20.35■□□□□ 0.85
LIME1-202ENST00000444951 STOX1Q6ZVD7 989 aa20.35■□□□□ 0.85
LIME1-202ENST00000444951 STAG1Q8WVM7 1258 aa20.35■□□□□ 0.85
LIME1-202ENST00000444951 ZNF333Q96JL9 665 aa20.35■□□□□ 0.85
LIME1-202ENST00000444951 C22orf23Q9BZE7 217 aa20.35■□□□□ 0.85
LIME1-202ENST00000444951 RNF41Q9H4P4 317 aaPredicted RBP20.35■□□□□ 0.85
LIME1-202ENST00000444951 CPA4Q9UI42 421 aa20.35■□□□□ 0.85
LIME1-202ENST00000444951 SNX14Q9Y5W7 946 aa20.35■□□□□ 0.85
LIME1-202ENST00000444951 ADGRA2Q96PE1 1338 aa20.34■□□□□ 0.85
LIME1-202ENST00000444951 TBC1D12O60347 775 aa20.34■□□□□ 0.85
LIME1-202ENST00000444951 RANBP6O60518 1105 aaKnown RBP20.34■□□□□ 0.85
LIME1-202ENST00000444951 LACTBP83111 547 aaPredicted RBP20.34■□□□□ 0.85
LIME1-202ENST00000444951 CERKLQ49MI3 558 aaPredicted RBP20.34■□□□□ 0.85
LIME1-202ENST00000444951 FAM47AQ5JRC9 791 aa20.34■□□□□ 0.85
LIME1-202ENST00000444951 C17orf99Q6UX52 265 aa20.34■□□□□ 0.85
LIME1-202ENST00000444951 METTL16Q86W50 562 aaKnown RBP20.34■□□□□ 0.85
LIME1-202ENST00000444951 ZNF444Q8N0Y2 327 aaPredicted RBP20.34■□□□□ 0.85
LIME1-202ENST00000444951 ZNF287Q9HBT7 754 aa20.34■□□□□ 0.85
LIME1-202ENST00000444951 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.34■□□□□ 0.85
LIME1-202ENST00000444951 PHIPQ8WWQ0 1821 aa20.33■□□□□ 0.85
LIME1-202ENST00000444951 B4E1Z4 1266 aa20.33■□□□□ 0.85
LIME1-202ENST00000444951 PDHXO00330 501 aa20.33■□□□□ 0.85
LIME1-202ENST00000444951 RASA1P20936 1047 aa20.33■□□□□ 0.85
LIME1-202ENST00000444951 TRDNQ13061 729 aa20.33■□□□□ 0.85
LIME1-202ENST00000444951 RRP1BQ14684 758 aaKnown RBP20.33■□□□□ 0.85
LIME1-202ENST00000444951 SHROOM1Q2M3G4 852 aaPredicted RBP20.33■□□□□ 0.85
LIME1-202ENST00000444951 RALYLQ86SE5 291 aaKnown RBP20.33■□□□□ 0.85
LIME1-202ENST00000444951 ANKRD23Q86SG2 305 aa20.33■□□□□ 0.85
LIME1-202ENST00000444951 PTPRFP10586 1907 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 MYH8P13535 1937 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 MYCP01106 439 aaPredicted RBP20.32■□□□□ 0.84
LIME1-202ENST00000444951 AKR1B1P15121 316 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 MAP3K10Q02779 954 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 ADCK5Q3MIX3 580 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 SLC9C1Q4G0N8 1177 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 GPAT2Q6NUI2 795 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 TATDN1Q6P1N9 297 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 NKX2-3Q8TAU0 364 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 SH3TC2Q8TF17 1288 aa20.32■□□□□ 0.84
LIME1-202ENST00000444951 JAKMIP1Q96N16 626 aaKnown RBP20.32■□□□□ 0.84
LIME1-202ENST00000444951 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.32■□□□□ 0.84
LIME1-202ENST00000444951 DOCK1Q14185 1865 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 TSPY2A6NKD2 308 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 ORC4O43929 436 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 KDM4AO75164 1064 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 TFAP4Q01664 338 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 KRT32Q14532 448 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 ABCB5Q2M3G0 1257 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 NCOA7Q8NI08 942 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 KCNB2Q92953 911 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 KRT23Q9C075 422 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 CNNM2Q9H8M5 875 aa20.31■□□□□ 0.84
LIME1-202ENST00000444951 GH2P01242 217 aa20.3■□□□□ 0.84
LIME1-202ENST00000444951 TSPY3P0CV98 308 aa20.3■□□□□ 0.84
LIME1-202ENST00000444951 TSPY8P0CW00 308 aa20.3■□□□□ 0.84
LIME1-202ENST00000444951 CPA1P15085 419 aa20.3■□□□□ 0.84
LIME1-202ENST00000444951 JAG1P78504 1218 aa20.3■□□□□ 0.84
LIME1-202ENST00000444951 CCDC84Q86UT8 332 aaPredicted RBP20.3■□□□□ 0.84
LIME1-202ENST00000444951 ESR2Q92731 530 aa20.3■□□□□ 0.84
LIME1-202ENST00000444951 TRIM47Q96LD4 638 aa20.3■□□□□ 0.84
LIME1-202ENST00000444951 FGRP09769 529 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 CYP2C8P10632 490 aa20.29■□□□□ 0.84
LIME1-202ENST00000444951 PCP11498 1178 aaKnown RBP20.29■□□□□ 0.84
LIME1-202ENST00000444951 PTPRAP18433 802 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms