RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 USP17L21D6R901 530 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 M0R2C6 588 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 TNPO2O14787 897 aaKnown RBP13.11□□□□□ -0.31
SF3A1-203ENST00000444440 AKR1B1P15121 316 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 Q3C1V9 767 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 C12orf60Q5U649 245 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 USP17L2Q6R6M4 530 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 NBPF11Q86T75 865 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 SIAH1Q8IUQ4 282 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 C12orf42Q96LP6 360 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 STRBPQ96SI9 672 aaKnown RBP13.11□□□□□ -0.31
SF3A1-203ENST00000444440 ATP8A2Q9NTI2 1148 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 RBPJLQ9UBG7 517 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 MORF4L1Q9UBU8 362 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 SLC4A4Q9Y6R1 1079 aa13.11□□□□□ -0.31
SF3A1-203ENST00000444440 CNMDO75829 334 aa13.1□□□□□ -0.31
SF3A1-203ENST00000444440 HOXD10P28358 340 aa13.1□□□□□ -0.31
SF3A1-203ENST00000444440 GCLCP48506 637 aaPredicted RBP13.1□□□□□ -0.31
SF3A1-203ENST00000444440 IRX3P78415 501 aaPredicted RBP13.1□□□□□ -0.31
SF3A1-203ENST00000444440 PABPC4Q13310 644 aaKnown RBP eCLIP13.1□□□□□ -0.31
SF3A1-203ENST00000444440 CTR9Q6PD62 1173 aa13.1□□□□□ -0.31
SF3A1-203ENST00000444440 SEC62Q99442 399 aaKnown RBP13.1□□□□□ -0.31
SF3A1-203ENST00000444440 KIAA1683Q9H0B3 1180 aa13.1□□□□□ -0.31
SF3A1-203ENST00000444440 EPB41L4AQ9HCS5 686 aaPredicted RBP13.1□□□□□ -0.31
SF3A1-203ENST00000444440 ZNF236Q9UL36 1845 aa13.1□□□□□ -0.31
SF3A1-203ENST00000444440 TTC41PQ6P2S7 1318 aa13.1□□□□□ -0.31
SF3A1-203ENST00000444440 LAMA4Q16363 1823 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 GSG1L2A8MUP6 293 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 RNF113AO15541 343 aaKnown RBP13.09□□□□□ -0.31
SF3A1-203ENST00000444440 ADCY3O60266 1144 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 CCL5P13501 91 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 VCAM1P19320 739 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 CDK8P49336 464 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 DNAH12Q6ZR08 3092 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 C16orf86Q6ZW13 317 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 APPBP2Q92624 585 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 FEZ1Q99689 392 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 TMEM106CQ9BVX2 250 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 UNC93B1Q9H1C4 597 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 PORCNQ9H237 461 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 GJD2Q9UKL4 321 aa13.09□□□□□ -0.31
SF3A1-203ENST00000444440 MPHOSPH10O00566 681 aaKnown RBP13.08□□□□□ -0.32
SF3A1-203ENST00000444440 INHAP05111 366 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 MX1P20591 662 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 ERVK-9P63128 1117 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 ERVK-24P63145 666 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 TRIM32Q13049 653 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 HDAC1Q13547 482 aaPredicted RBP13.08□□□□□ -0.32
SF3A1-203ENST00000444440 IRF5Q13568 498 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 ZSCAN25Q6NSZ9 544 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 CATSPERGQ6ZRH7 1159 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 STK11IPQ8N1F8 1099 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 SLAIN1Q8ND83 568 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 EXOC6Q8TAG9 804 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 GPATCH3Q96I76 525 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 PAGR1Q9BTK6 254 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.08□□□□□ -0.32
SF3A1-203ENST00000444440 CABP5Q9NP86 173 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 SMCHD1A6NHR9 2005 aa13.08□□□□□ -0.32
SF3A1-203ENST00000444440 ROBO3Q96MS0 1386 aa13.07□□□□□ -0.32
SF3A1-203ENST00000444440 SPDYE16A6NNV3 312 aaPredicted RBP13.07□□□□□ -0.32
SF3A1-203ENST00000444440 GPAA1O43292 621 aa13.07□□□□□ -0.32
SF3A1-203ENST00000444440 ANKRD45Q5TZF3 282 aa13.07□□□□□ -0.32
SF3A1-203ENST00000444440 COA7Q96BR5 231 aa13.07□□□□□ -0.32
SF3A1-203ENST00000444440 RPAP3Q9H6T3 665 aaPredicted RBP13.07□□□□□ -0.32
SF3A1-203ENST00000444440 BTBD7Q9P203 1132 aa13.07□□□□□ -0.32
SF3A1-203ENST00000444440 SWAP70Q9UH65 585 aa13.07□□□□□ -0.32
SF3A1-203ENST00000444440 TAOK2Q9UL54 1235 aa13.07□□□□□ -0.32
SF3A1-203ENST00000444440 USP17L15C9J2P7 530 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 USP17L13C9JLJ4 530 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 USP17L11C9JVI0 530 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 USP17L18D6R9N7 530 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 USP17L22D6RA61 530 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 USP17L17D6RBQ6 530 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 USP17L19D6RCP7 530 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 USP17L20D6RJB6 530 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 FOXP2O15409 715 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 GLRX3O76003 335 aaKnown RBP13.06□□□□□ -0.32
SF3A1-203ENST00000444440 IGHDP01880 384 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 USP14P54578 494 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 USP17L24Q0WX57 530 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 TMEM179Q6ZVK1 233 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 PXYLP1Q8TE99 480 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 RNF208Q9H0X6 261 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 BIN2Q9UBW5 565 aaPredicted RBP13.06□□□□□ -0.32
SF3A1-203ENST00000444440 MCM3APO60318 1980 aa13.06□□□□□ -0.32
SF3A1-203ENST00000444440 RASA1P20936 1047 aa13.05□□□□□ -0.32
SF3A1-203ENST00000444440 ICA1Q05084 483 aa13.05□□□□□ -0.32
SF3A1-203ENST00000444440 SBK1Q52WX2 424 aa13.05□□□□□ -0.32
SF3A1-203ENST00000444440 ZMYM1Q5SVZ6 1142 aa13.05□□□□□ -0.32
SF3A1-203ENST00000444440 CCDC129Q6ZRS4 1044 aa13.05□□□□□ -0.32
SF3A1-203ENST00000444440 UBE2Q1Q7Z7E8 422 aa13.05□□□□□ -0.32
SF3A1-203ENST00000444440 GPRC5AQ8NFJ5 357 aa13.05□□□□□ -0.32
SF3A1-203ENST00000444440 TRIB2Q92519 343 aa13.05□□□□□ -0.32
SF3A1-203ENST00000444440 USP6NLQ92738 828 aa13.05□□□□□ -0.32
SF3A1-203ENST00000444440 ARPP21Q9UBL0 812 aaPredicted RBP13.05□□□□□ -0.32
SF3A1-203ENST00000444440 MINDY4BA8MYZ0 360 aa13.04□□□□□ -0.32
SF3A1-203ENST00000444440 ERC2O15083 957 aa13.04□□□□□ -0.32
SF3A1-203ENST00000444440 GJB1P08034 283 aa13.04□□□□□ -0.32
SF3A1-203ENST00000444440 CYP2B6P20813 491 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms