RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 CALCRLQ16602 461 aa13.83□□□□□ -0.19
TCOF1-205ENST00000439160 NSMFQ6X4W1 530 aa13.83□□□□□ -0.19
TCOF1-205ENST00000439160 AFF2P51816 1311 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 RXRBP28702 533 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 ZNF75DP51815 510 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 TBC1D8BQ0IIM8 1120 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 NCAPH2Q6IBW4 605 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 CTNNBL1Q8WYA6 563 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-205ENST00000439160 ATP10DQ9P241 1426 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 USP17L8P0C7I0 530 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 CSGALNACT2Q8N6G5 542 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 STRBPQ96SI9 672 aaKnown RBP13.83□□□□□ -0.2
TCOF1-205ENST00000439160 NAP1L4Q99733 375 aaKnown RBP13.83□□□□□ -0.2
TCOF1-205ENST00000439160 NARFQ9UHQ1 456 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 FOXO4P98177 505 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 IGSF22Q8N9C0 903 aa13.83□□□□□ -0.2
TCOF1-205ENST00000439160 CARMIL3Q8ND23 1372 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 DIP2AQ14689 1571 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 DIP2BQ9P265 1576 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 DESP17661 470 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 SETQ01105 290 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 MECOMQ03112 1051 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 CERKLQ49MI3 558 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 DCAF17Q5H9S7 520 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 TBC1D9BQ66K14 1250 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 NEK11Q8NG66 645 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 KIFC2Q96AC6 838 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 AIFM3Q96NN9 605 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 GUCA1BQ9UMX6 200 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 IQGAP1P46940 1657 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 PREX1Q8TCU6 1659 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 DDX39AO00148 427 aaKnown RBP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 NDUFA8P51970 172 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 HLTFQ14527 1009 aaKnown RBP eCLIP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 ZNF827Q17R98 1081 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 SYT10Q6XYQ8 523 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 GLT8D2Q9H1C3 349 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 COL15A1P39059 1388 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 SYNRGQ9UMZ2 1314 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 MMP10P09238 476 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 GRAPQ13588 217 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 HERC4Q5GLZ8 1057 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 CABP7Q86V35 215 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 EHBP1Q8NDI1 1231 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 GRAPLQ8TC17 118 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 BAG1Q99933 345 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 NOC4LQ9BVI4 516 aaKnown RBP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 ZC3H13Q5T200 1668 aaKnown RBP13.82□□□□□ -0.2
TCOF1-205ENST00000439160 TECPR2O15040 1411 aa13.82□□□□□ -0.2
TCOF1-205ENST00000439160 MYCLP12524 364 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-205ENST00000439160 HAUS3Q68CZ6 603 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 DYNLL2Q96FJ2 89 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 TBC1D7Q9P0N9 293 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 MINPP1Q9UNW1 487 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 PRDX5P30044 214 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 KIF5AQ12840 1032 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 PAK1Q13153 545 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 TBC1D5Q92609 795 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 INCENPQ9NQS7 918 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 PHACTR2O75167 634 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 CMA1P23946 247 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 SCARF1Q14162 830 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 MAP9Q49MG5 647 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 ZNF772Q68DY9 489 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-205ENST00000439160 ARHGEF1Q92888 912 aaKnown RBP13.81□□□□□ -0.2
TCOF1-205ENST00000439160 ZNF408Q9H9D4 720 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 CGNQ9P2M7 1197 aaKnown RBP13.81□□□□□ -0.2
TCOF1-205ENST00000439160 AKR1B15C9JRZ8 316 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-205ENST00000439160 H0YHG0 523 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 IGSF3O75054 1194 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 DDAH1O94760 285 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 TRIM28Q13263 835 aaKnown RBP13.81□□□□□ -0.2
TCOF1-205ENST00000439160 CNNM4Q6P4Q7 775 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 MAEAQ7L5Y9 396 aa13.81□□□□□ -0.2
TCOF1-205ENST00000439160 CLRN2A0PK11 232 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 PCP11498 1178 aaKnown RBP13.8□□□□□ -0.2
TCOF1-205ENST00000439160 ICA1Q05084 483 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 PTGDRQ13258 359 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 USP37Q86T82 979 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 CNGA4Q8IV77 575 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 GTPBP4Q9BZE4 634 aaKnown RBP13.8□□□□□ -0.2
TCOF1-205ENST00000439160 TSPYL1Q9H0U9 437 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 SH2B2O14492 632 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-205ENST00000439160 SOS2Q07890 1332 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-205ENST00000439160 KIAA1210Q9ULL0 1709 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 FRMPD1Q5SYB0 1578 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 POLR3GO15318 223 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-205ENST00000439160 CCDC172P0C7W6 258 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 NR5A1Q13285 461 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 GPIHBP1Q8IV16 184 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 RASGRP4Q8TDF6 673 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 GJB4Q9NTQ9 266 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 CWC15Q9P013 229 aaKnown RBP13.8□□□□□ -0.2
TCOF1-205ENST00000439160 CDHR2Q9BYE9 1310 aa13.8□□□□□ -0.2
TCOF1-205ENST00000439160 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.79□□□□□ -0.2
TCOF1-205ENST00000439160 PSTPIP2Q9H939 334 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 TAB2Q9NYJ8 693 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 MRVI1Q9Y6F6 885 aa13.79□□□□□ -0.2
TCOF1-205ENST00000439160 KRT86O43790 486 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms