RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TRIM6-TRIM34B2RNG4 842 aa14.61□□□□□ -0.07
PTPRF-208ENST00000437607 GDF11O95390 407 aa14.61□□□□□ -0.07
PTPRF-208ENST00000437607 HOXA7P31268 230 aaPredicted RBP14.61□□□□□ -0.07
PTPRF-208ENST00000437607 POTEEQ6S8J3 1075 aa14.61□□□□□ -0.07
PTPRF-208ENST00000437607 NECAB2Q7Z6G3 386 aa14.61□□□□□ -0.07
PTPRF-208ENST00000437607 P2RX7Q99572 595 aaKnown RBP14.61□□□□□ -0.07
PTPRF-208ENST00000437607 DHX36Q9H2U1 1008 aaKnown RBP14.61□□□□□ -0.07
PTPRF-208ENST00000437607 PALD1Q9ULE6 856 aa14.61□□□□□ -0.07
PTPRF-208ENST00000437607 RPTORQ8N122 1335 aa14.61□□□□□ -0.07
PTPRF-208ENST00000437607 COL11A1P12107 1806 aaPredicted RBP14.6□□□□□ -0.07
PTPRF-208ENST00000437607 A0A1W2PPC1 479 aa14.6□□□□□ -0.07
PTPRF-208ENST00000437607 BAG3O95817 575 aa14.6□□□□□ -0.07
PTPRF-208ENST00000437607 ASNSP08243 561 aa14.6□□□□□ -0.07
PTPRF-208ENST00000437607 ATP5JP18859 108 aa14.6□□□□□ -0.07
PTPRF-208ENST00000437607 ANKLE1Q8NAG6 615 aa14.6□□□□□ -0.07
PTPRF-208ENST00000437607 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.6□□□□□ -0.07
PTPRF-208ENST00000437607 DNAJC2Q99543 621 aaKnown RBP14.6□□□□□ -0.07
PTPRF-208ENST00000437607 NOL10Q9BSC4 688 aaKnown RBP14.6□□□□□ -0.07
PTPRF-208ENST00000437607 BOLA2Q9H3K6 86 aa14.6□□□□□ -0.07
PTPRF-208ENST00000437607 PIH1D3Q9NQM4 214 aaKnown RBP14.6□□□□□ -0.07
PTPRF-208ENST00000437607 RBPJLQ9UBG7 517 aa14.6□□□□□ -0.07
PTPRF-208ENST00000437607 PLCG2P16885 1265 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 CYP2B6P20813 491 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 ZAP70P43403 619 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 HERVK_113P62684 666 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 DYNLL1P63167 89 aaKnown RBP14.59□□□□□ -0.07
PTPRF-208ENST00000437607 IRX3P78415 501 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-208ENST00000437607 Q3C1V9 767 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 MAP3K21Q5TCX8 1036 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 CASC1Q6TDU7 716 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 FOXP4Q8IVH2 680 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-208ENST00000437607 RILPL2Q969X0 211 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 LRCH3Q96II8 777 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 ZNF512BQ96KM6 892 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-208ENST00000437607 HMX1Q9NP08 348 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-208ENST00000437607 EMILIN3Q9NT22 766 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 SAP30BPQ9UHR5 308 aaKnown RBP14.59□□□□□ -0.07
PTPRF-208ENST00000437607 ZBTB21Q9ULJ3 1066 aa14.59□□□□□ -0.07
PTPRF-208ENST00000437607 A0A0G2JMZ2 1700 aa14.58□□□□□ -0.07
PTPRF-208ENST00000437607 C19orf81C9J6K1 198 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 USP17L10C9JJH3 530 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 CDC45O75419 566 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 SDSP20132 328 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 C7orf61Q8IZ16 206 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 USP6NLQ92738 828 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 HAUS7Q99871 368 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 GDF15Q99988 308 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 TMOD4Q9NZQ9 345 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 OGDHLQ9ULD0 1010 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 UNC80Q8N2C7 3258 aa14.58□□□□□ -0.08
PTPRF-208ENST00000437607 LTBP2Q14767 1821 aa14.57□□□□□ -0.08
PTPRF-208ENST00000437607 PRKAR2AP13861 404 aaKnown RBP14.57□□□□□ -0.08
PTPRF-208ENST00000437607 CRACR2BQ8N4Y2 399 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-208ENST00000437607 GPRC5AQ8NFJ5 357 aa14.57□□□□□ -0.08
PTPRF-208ENST00000437607 EVI5LQ96CN4 794 aa14.57□□□□□ -0.08
PTPRF-208ENST00000437607 FSD1Q9BTV5 496 aa14.57□□□□□ -0.08
PTPRF-208ENST00000437607 PORCNQ9H237 461 aa14.57□□□□□ -0.08
PTPRF-208ENST00000437607 GINM1Q9NU53 330 aa14.57□□□□□ -0.08
PTPRF-208ENST00000437607 NDUFB9Q9Y6M9 179 aa14.57□□□□□ -0.08
PTPRF-208ENST00000437607 PFASO15067 1338 aa14.57□□□□□ -0.08
PTPRF-208ENST00000437607 PLXNA1Q9UIW2 1896 aa14.57□□□□□ -0.08
PTPRF-208ENST00000437607 SMCHD1A6NHR9 2005 aa14.56□□□□□ -0.08
PTPRF-208ENST00000437607 XRCC5P13010 732 aaKnown RBP14.56□□□□□ -0.08
PTPRF-208ENST00000437607 BMP8BP34820 402 aa14.56□□□□□ -0.08
PTPRF-208ENST00000437607 ERVK-9P63128 1117 aa14.56□□□□□ -0.08
PTPRF-208ENST00000437607 ERVK-24P63145 666 aa14.56□□□□□ -0.08
PTPRF-208ENST00000437607 NBPF3Q9H094 633 aa14.56□□□□□ -0.08
PTPRF-208ENST00000437607 C11orf49Q9H6J7 331 aa14.56□□□□□ -0.08
PTPRF-208ENST00000437607 PAG1Q9NWQ8 432 aa14.56□□□□□ -0.08
PTPRF-208ENST00000437607 ZMYND8Q9ULU4 1186 aaPredicted RBP14.56□□□□□ -0.08
PTPRF-208ENST00000437607 ZNF236Q9UL36 1845 aa14.56□□□□□ -0.08
PTPRF-208ENST00000437607 GOLIM4O00461 696 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 IGSF3O75054 1194 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 CNMDO75829 334 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 GH2P01242 217 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 CYP7A1P22680 504 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 CACNB2Q08289 660 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-208ENST00000437607 CCL14Q16627 93 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 MORN1Q5T089 497 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 TATDN1Q6P1N9 297 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 GPR142Q7Z601 462 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 MIGA1Q8NAN2 632 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 SOCS4Q8WXH5 440 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 NUDT12Q9BQG2 462 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 PAGR1Q9BTK6 254 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 TRIM34Q9BYJ4 488 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 ANTXR1Q9H6X2 564 aa14.55□□□□□ -0.08
PTPRF-208ENST00000437607 HLA-DOAP06340 250 aa14.54□□□□□ -0.08
PTPRF-208ENST00000437607 SYN1P17600 705 aa14.54□□□□□ -0.08
PTPRF-208ENST00000437607 CCND3P30281 292 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-208ENST00000437607 MAPK4P31152 587 aa14.54□□□□□ -0.08
PTPRF-208ENST00000437607 TTF1Q15361 905 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-208ENST00000437607 LRRFIP1Q32MZ4 808 aaKnown RBP14.54□□□□□ -0.08
PTPRF-208ENST00000437607 LHX8Q68G74 356 aa14.54□□□□□ -0.08
PTPRF-208ENST00000437607 USP17L2Q6R6M4 530 aa14.54□□□□□ -0.08
PTPRF-208ENST00000437607 C12orf42Q96LP6 360 aa14.54□□□□□ -0.08
PTPRF-208ENST00000437607 DIAPH3Q9NSV4 1193 aa14.54□□□□□ -0.08
PTPRF-208ENST00000437607 HIP1O00291 1037 aa14.53□□□□□ -0.08
PTPRF-208ENST00000437607 IDH1O75874 414 aaKnown RBP14.53□□□□□ -0.08
PTPRF-208ENST00000437607 COL6A1P12109 1028 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms