RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 KCNJ14Q9UNX9 436 aa24.48■■□□□ 1.51
PTPRF-207ENST00000436724 MTMR7Q9Y216 660 aa24.48■■□□□ 1.51
PTPRF-207ENST00000436724 SRCAPQ6ZRS2 3230 aa24.48■■□□□ 1.51
PTPRF-207ENST00000436724 PSMD14O00487 310 aa24.47■■□□□ 1.51
PTPRF-207ENST00000436724 ZNF445P59923 1031 aa24.47■■□□□ 1.51
PTPRF-207ENST00000436724 DALRD3Q5D0E6 543 aaKnown RBP24.47■■□□□ 1.51
PTPRF-207ENST00000436724 TMTC3Q6ZXV5 915 aa24.47■■□□□ 1.51
PTPRF-207ENST00000436724 SRBD1Q8N5C6 995 aaKnown RBP24.47■■□□□ 1.51
PTPRF-207ENST00000436724 WASF1Q92558 559 aa24.47■■□□□ 1.51
PTPRF-207ENST00000436724 RNF26Q9BY78 433 aaPredicted RBP24.47■■□□□ 1.51
PTPRF-207ENST00000436724 MYH6P13533 1939 aa24.47■■□□□ 1.51
PTPRF-207ENST00000436724 NT5C2P49902 561 aa24.47■■□□□ 1.51
PTPRF-207ENST00000436724 NEDD1Q8NHV4 660 aa24.47■■□□□ 1.51
PTPRF-207ENST00000436724 ANKS1AQ92625 1134 aa24.47■■□□□ 1.51
PTPRF-207ENST00000436724 ZNF396Q96N95 335 aaPredicted RBP24.47■■□□□ 1.51
PTPRF-207ENST00000436724 V9GY48 417 aaPredicted RBP24.47■■□□□ 1.51
PTPRF-207ENST00000436724 PKN1Q16512 942 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 MYSM1Q5VVJ2 828 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 SGIP1Q9BQI5 828 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 TMEM47Q9BQJ4 181 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 SERPINB13Q9UIV8 391 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 ZBTB12Q9Y330 459 aaPredicted RBP24.46■■□□□ 1.51
PTPRF-207ENST00000436724 CFAP100Q494V2 611 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 RASGRP2Q7LDG7 609 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 BRAPQ7Z569 592 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 SHISA4Q96DD7 197 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 CEP95Q96GE4 821 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 TDRD3Q9H7E2 651 aaKnown RBP24.46■■□□□ 1.51
PTPRF-207ENST00000436724 FAM198AQ9UFP1 575 aa24.46■■□□□ 1.51
PTPRF-207ENST00000436724 RSBN1LQ6PCB5 846 aaPredicted RBP24.45■■□□□ 1.5
PTPRF-207ENST00000436724 PRMT6Q96LA8 375 aaPredicted RBP24.45■■□□□ 1.5
PTPRF-207ENST00000436724 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.45■■□□□ 1.5
PTPRF-207ENST00000436724 RCOR1Q9UKL0 485 aa24.45■■□□□ 1.5
PTPRF-207ENST00000436724 PSME4Q14997 1843 aa24.45■■□□□ 1.5
PTPRF-207ENST00000436724 LIG1P18858 919 aa24.44■■□□□ 1.5
PTPRF-207ENST00000436724 AKAP17AQ02040 695 aaKnown RBP24.44■■□□□ 1.5
PTPRF-207ENST00000436724 STAG2Q8N3U4 1231 aa24.44■■□□□ 1.5
PTPRF-207ENST00000436724 RGS22Q8NE09 1264 aa24.44■■□□□ 1.5
PTPRF-207ENST00000436724 PIBF1Q8WXW3 757 aa24.44■■□□□ 1.5
PTPRF-207ENST00000436724 CLIC4Q9Y696 253 aa24.44■■□□□ 1.5
PTPRF-207ENST00000436724 CNTNAP5Q8WYK1 1306 aa24.44■■□□□ 1.5
PTPRF-207ENST00000436724 BRCA1P38398 1863 aaKnown RBP24.44■■□□□ 1.5
PTPRF-207ENST00000436724 GOLGA6L4A6NEF3 574 aa24.44■■□□□ 1.5
PTPRF-207ENST00000436724 GNL2Q13823 731 aaKnown RBP24.44■■□□□ 1.5
PTPRF-207ENST00000436724 SYAP1Q96A49 352 aaPredicted RBP24.44■■□□□ 1.5
PTPRF-207ENST00000436724 DDTLA6NHG4 134 aaPredicted RBP24.43■■□□□ 1.5
PTPRF-207ENST00000436724 PRPF3O43395 683 aaKnown RBP24.43■■□□□ 1.5
PTPRF-207ENST00000436724 MMP1P03956 469 aa24.43■■□□□ 1.5
PTPRF-207ENST00000436724 AKR1B1P15121 316 aa24.43■■□□□ 1.5
PTPRF-207ENST00000436724 CCDC178Q5BJE1 867 aa24.43■■□□□ 1.5
PTPRF-207ENST00000436724 SOGA3Q5TF21 947 aa24.43■■□□□ 1.5
PTPRF-207ENST00000436724 ATL3Q6DD88 541 aa24.43■■□□□ 1.5
PTPRF-207ENST00000436724 VPS54Q9P1Q0 977 aa24.43■■□□□ 1.5
PTPRF-207ENST00000436724 BTBD18B2RXH4 712 aa24.43■■□□□ 1.5
PTPRF-207ENST00000436724 VIL1P09327 827 aaKnown RBP24.43■■□□□ 1.5
PTPRF-207ENST00000436724 CLEC10AQ8IUN9 316 aa24.43■■□□□ 1.5
PTPRF-207ENST00000436724 IDI2Q9BXS1 227 aa24.43■■□□□ 1.5
PTPRF-207ENST00000436724 FAM196BA6NMK8 535 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 U2AF2P26368 475 aaKnown RBP eCLIP24.42■■□□□ 1.5
PTPRF-207ENST00000436724 SHMT1P34896 483 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 SH3BP5LQ7L8J4 393 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 MYH8P13535 1937 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 HLA-DOAP06340 250 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 NIM1KQ8IY84 436 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 DIS3L2Q8IYB7 885 aaKnown RBP24.42■■□□□ 1.5
PTPRF-207ENST00000436724 GMLQ99445 158 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 RTEL1Q9NZ71 1219 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 MAD2L2Q9UI95 211 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 ZNRF3Q9ULT6 936 aa24.42■■□□□ 1.5
PTPRF-207ENST00000436724 VEGFAP15692 232 aaPredicted RBP24.41■■□□□ 1.5
PTPRF-207ENST00000436724 KIF5BP33176 963 aa24.41■■□□□ 1.5
PTPRF-207ENST00000436724 PTGER2P43116 358 aa24.41■■□□□ 1.5
PTPRF-207ENST00000436724 CCDC183Q5T5S1 534 aa24.41■■□□□ 1.5
PTPRF-207ENST00000436724 ZSCAN29Q8IWY8 852 aaPredicted RBP24.41■■□□□ 1.5
PTPRF-207ENST00000436724 DNAJC18Q9H819 358 aa24.41■■□□□ 1.5
PTPRF-207ENST00000436724 BCS1LQ9Y276 419 aa24.41■■□□□ 1.5
PTPRF-207ENST00000436724 EIF6P56537 245 aaKnown RBP24.4■■□□□ 1.5
PTPRF-207ENST00000436724 BICD2Q8TD16 824 aa24.4■■□□□ 1.5
PTPRF-207ENST00000436724 OXER1Q8TDS5 423 aa24.4■■□□□ 1.5
PTPRF-207ENST00000436724 TAOK3Q9H2K8 898 aa24.4■■□□□ 1.5
PTPRF-207ENST00000436724 NFKBIEO00221 500 aa24.4■■□□□ 1.5
PTPRF-207ENST00000436724 GOLGA8HP0CJ92 632 aa24.4■■□□□ 1.5
PTPRF-207ENST00000436724 NASPP49321 788 aaPredicted RBP24.4■■□□□ 1.5
PTPRF-207ENST00000436724 NR5A1Q13285 461 aa24.4■■□□□ 1.5
PTPRF-207ENST00000436724 GRM4Q14833 912 aa24.4■■□□□ 1.5
PTPRF-207ENST00000436724 LINC00301Q8NCQ3 95 aa24.4■■□□□ 1.5
PTPRF-207ENST00000436724 SIPA1L1O43166 1804 aa24.39■■□□□ 1.5
PTPRF-207ENST00000436724 LRSAM1Q6UWE0 723 aa24.39■■□□□ 1.5
PTPRF-207ENST00000436724 VPS33BQ9H267 617 aa24.39■■□□□ 1.5
PTPRF-207ENST00000436724 POLR3EQ9NVU0 708 aa24.39■■□□□ 1.5
PTPRF-207ENST00000436724 SWAP70Q9UH65 585 aa24.39■■□□□ 1.5
PTPRF-207ENST00000436724 MYO3BQ8WXR4 1341 aa24.39■■□□□ 1.5
PTPRF-207ENST00000436724 FER1L6Q2WGJ9 1857 aa24.39■■□□□ 1.49
PTPRF-207ENST00000436724 CLCN1P35523 988 aa24.39■■□□□ 1.49
PTPRF-207ENST00000436724 ME1P48163 572 aa24.39■■□□□ 1.49
PTPRF-207ENST00000436724 CXCL9Q07325 125 aa24.39■■□□□ 1.49
PTPRF-207ENST00000436724 SLC35G1Q2M3R5 365 aa24.39■■□□□ 1.49
PTPRF-207ENST00000436724 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.39■■□□□ 1.49
PTPRF-207ENST00000436724 SAFBQ15424 915 aaKnown RBP eCLIP24.38■■□□□ 1.49
PTPRF-207ENST00000436724 NOSTRINQ8IVI9 506 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms