RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 A0A0D9SFI3 127 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 C19orf81C9J6K1 198 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 USP17L10C9JJH3 530 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 TLR2O60603 784 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 CDK8P49336 464 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 HMGCS2P54868 508 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 MFAP1P55081 439 aaKnown RBP13.67□□□□□ -0.22
COL28A1-203ENST00000435823 NMIQ13287 307 aaPredicted RBP13.67□□□□□ -0.22
COL28A1-203ENST00000435823 PABPC4Q13310 644 aaKnown RBP eCLIP13.67□□□□□ -0.22
COL28A1-203ENST00000435823 SH3D19Q5HYK7 790 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 GPAT2Q6NUI2 795 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 CCDC129Q6ZRS4 1044 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 CCDC136Q96JN2 1154 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 FAM227BQ96M60 508 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 FEZ1Q99689 392 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 ZNF287Q9HBT7 754 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 PNMA3Q9UL41 463 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 AGTPBP1Q9UPW5 1226 aa13.67□□□□□ -0.22
COL28A1-203ENST00000435823 SLC3A2P08195 630 aaKnown RBP13.66□□□□□ -0.22
COL28A1-203ENST00000435823 PRR29P0C7W0 189 aa13.66□□□□□ -0.22
COL28A1-203ENST00000435823 BACE1P56817 501 aa13.66□□□□□ -0.22
COL28A1-203ENST00000435823 SP3Q02447 781 aa13.66□□□□□ -0.22
COL28A1-203ENST00000435823 TMEM179Q6ZVK1 233 aa13.66□□□□□ -0.22
COL28A1-203ENST00000435823 CTU1Q7Z7A3 348 aaKnown RBP13.66□□□□□ -0.22
COL28A1-203ENST00000435823 ERO1AQ96HE7 468 aa13.66□□□□□ -0.22
COL28A1-203ENST00000435823 LOC285556D6RIA3 1793 aa13.66□□□□□ -0.22
COL28A1-203ENST00000435823 CCDC171Q6TFL3 1326 aa13.65□□□□□ -0.22
COL28A1-203ENST00000435823 AKR1B1P15121 316 aa13.65□□□□□ -0.22
COL28A1-203ENST00000435823 GSPT1P15170 499 aaKnown RBP13.65□□□□□ -0.22
COL28A1-203ENST00000435823 USP14P54578 494 aa13.65□□□□□ -0.22
COL28A1-203ENST00000435823 DGKZQ13574 1117 aa13.65□□□□□ -0.22
COL28A1-203ENST00000435823 SEPT2Q15019 361 aa13.65□□□□□ -0.22
COL28A1-203ENST00000435823 USP17L2Q6R6M4 530 aa13.65□□□□□ -0.22
COL28A1-203ENST00000435823 CWC27Q6UX04 472 aaKnown RBP13.65□□□□□ -0.22
COL28A1-203ENST00000435823 MKNK2Q9HBH9 465 aa13.65□□□□□ -0.22
COL28A1-203ENST00000435823 SSUH2Q9Y2M2 353 aa13.65□□□□□ -0.22
COL28A1-203ENST00000435823 ROBO3Q96MS0 1386 aa13.65□□□□□ -0.22
COL28A1-203ENST00000435823 SMIM22K7EJ46 135 aa13.64□□□□□ -0.23
COL28A1-203ENST00000435823 CYP2C8P10632 490 aa13.64□□□□□ -0.23
COL28A1-203ENST00000435823 OSBPP22059 807 aa13.64□□□□□ -0.23
COL28A1-203ENST00000435823 GUCY1A2P33402 732 aa13.64□□□□□ -0.23
COL28A1-203ENST00000435823 PDE4BQ07343 736 aa13.64□□□□□ -0.23
COL28A1-203ENST00000435823 KIF22Q14807 665 aa13.64□□□□□ -0.23
COL28A1-203ENST00000435823 ARHGEF6Q15052 776 aa13.64□□□□□ -0.23
COL28A1-203ENST00000435823 TREML2Q5T2D2 321 aa13.64□□□□□ -0.23
COL28A1-203ENST00000435823 STK11IPQ8N1F8 1099 aa13.64□□□□□ -0.23
COL28A1-203ENST00000435823 SMCR8Q8TEV9 937 aaPredicted RBP13.64□□□□□ -0.23
COL28A1-203ENST00000435823 IRX3P78415 501 aaPredicted RBP13.63□□□□□ -0.23
COL28A1-203ENST00000435823 ICA1Q05084 483 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 PPARAQ07869 468 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 ALX1Q15699 326 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 ZYXQ15942 572 aaKnown RBP13.63□□□□□ -0.23
COL28A1-203ENST00000435823 PKN2Q16513 984 aaKnown RBP13.63□□□□□ -0.23
COL28A1-203ENST00000435823 VPS53Q5VIR6 699 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 C17orf99Q6UX52 265 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 ZNF589Q86UQ0 364 aaPredicted RBP13.63□□□□□ -0.23
COL28A1-203ENST00000435823 ZNF444Q8N0Y2 327 aaPredicted RBP13.63□□□□□ -0.23
COL28A1-203ENST00000435823 CD99L2Q8TCZ2 262 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 ACER1Q8TDN7 264 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 MCOLN1Q9GZU1 580 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 KIAA1683Q9H0B3 1180 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 SH2D4AQ9H788 454 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 ARHGEF10LQ9HCE6 1279 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 CPA4Q9UI42 421 aa13.63□□□□□ -0.23
COL28A1-203ENST00000435823 FOXP2O15409 715 aa13.62□□□□□ -0.23
COL28A1-203ENST00000435823 HSPD1P10809 573 aaKnown RBP13.62□□□□□ -0.23
COL28A1-203ENST00000435823 C12orf42Q96LP6 360 aa13.62□□□□□ -0.23
COL28A1-203ENST00000435823 KANSL2Q9H9L4 492 aa13.62□□□□□ -0.23
COL28A1-203ENST00000435823 EMILIN3Q9NT22 766 aa13.62□□□□□ -0.23
COL28A1-203ENST00000435823 ZMYM6O95789 1325 aa13.62□□□□□ -0.23
COL28A1-203ENST00000435823 ADGRA2Q96PE1 1338 aa13.62□□□□□ -0.23
COL28A1-203ENST00000435823 RASA1P20936 1047 aa13.61□□□□□ -0.23
COL28A1-203ENST00000435823 HOXA7P31268 230 aaPredicted RBP13.61□□□□□ -0.23
COL28A1-203ENST00000435823 POTEGQ6S5H5 508 aa13.61□□□□□ -0.23
COL28A1-203ENST00000435823 RUFY2Q8WXA3 655 aa13.61□□□□□ -0.23
COL28A1-203ENST00000435823 ASCC2Q9H1I8 757 aaPredicted RBP13.61□□□□□ -0.23
COL28A1-203ENST00000435823 EFCC1Q9HA90 598 aa13.61□□□□□ -0.23
COL28A1-203ENST00000435823 TRIM17Q9Y577 477 aa13.61□□□□□ -0.23
COL28A1-203ENST00000435823 RAD50Q92878 1312 aa13.61□□□□□ -0.23
COL28A1-203ENST00000435823 PRDM1O75626 825 aa13.6□□□□□ -0.23
COL28A1-203ENST00000435823 FGAP02671 866 aa13.6□□□□□ -0.23
COL28A1-203ENST00000435823 GCLCP48506 637 aaPredicted RBP13.6□□□□□ -0.23
COL28A1-203ENST00000435823 LACTBP83111 547 aaPredicted RBP13.6□□□□□ -0.23
COL28A1-203ENST00000435823 ATP2B2Q01814 1243 aa13.6□□□□□ -0.23
COL28A1-203ENST00000435823 CTDSPL2Q05D32 466 aa13.6□□□□□ -0.23
COL28A1-203ENST00000435823 ERICH6BQ5W0A0 696 aa13.6□□□□□ -0.23
COL28A1-203ENST00000435823 ANAPC4Q9UJX5 808 aa13.6□□□□□ -0.23
COL28A1-203ENST00000435823 A0A1W2PRG0 241 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 USP17L15C9J2P7 530 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 USP17L13C9JLJ4 530 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 USP17L11C9JVI0 530 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 USP17L18D6R9N7 530 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 USP17L22D6RA61 530 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 USP17L17D6RBQ6 530 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 USP17L19D6RCP7 530 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 USP17L20D6RJB6 530 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 TSPY3P0CV98 308 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 TSPY8P0CW00 308 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 BCRP11274 1271 aa13.59□□□□□ -0.23
COL28A1-203ENST00000435823 EEF2P13639 858 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms