RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ZNF804BA4D1E1 1349 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 COL14A1Q05707 1796 aaKnown RBP12.86□□□□□ -0.35
USP4-205ENST00000431357 MINDY4BA8MYZ0 360 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 SNAP23O00161 211 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 GNG11P61952 73 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 GOLGA8FQ08AF8 430 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 GOLGA8DPQ0D2H9 430 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 FILIP1LQ4L180 1135 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 TMED8Q6PL24 325 aaPredicted RBP12.86□□□□□ -0.35
USP4-205ENST00000431357 IQCA1Q86XH1 822 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 LRRN4CLQ8ND94 238 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 CARD6Q9BX69 1037 aa12.86□□□□□ -0.35
USP4-205ENST00000431357 DDAH1O94760 285 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 CAMTA2O94983 1202 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 NTSR2O95665 410 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 FGRP09769 529 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 ATP2B1P20020 1258 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 PKN1Q16512 942 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 ZNF827Q17R98 1081 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 IFIT1BQ5T764 474 aaKnown RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 TRMT44Q8IYL2 757 aaKnown RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 GRAMD1CQ8IYS0 662 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 CMTR1Q8N1G2 835 aaKnown RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 DHX58Q96C10 678 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 PAGE5Q96GU1 130 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 SAMSN1Q9NSI8 373 aaKnown RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 ZRANB2O95218 330 aaKnown RBP eCLIP12.85□□□□□ -0.35
USP4-205ENST00000431357 CCDC175P0C221 793 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 ADKP55263 362 aaKnown RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 IRX3P78415 501 aaPredicted RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 FUT2Q10981 343 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 UBE4AQ14139 1066 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 PPFIBP1Q86W92 1011 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 GPR161Q8N6U8 529 aaKnown RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 ENAHQ8N8S7 591 aaPredicted RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 CCDC51Q96ER9 411 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 MED15Q96RN5 788 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 RIOK1Q9BRS2 568 aaKnown RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 CDCA7Q9BWT1 371 aaPredicted RBP12.85□□□□□ -0.35
USP4-205ENST00000431357 VPS54Q9P1Q0 977 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 FHOD1Q9Y613 1164 aa12.85□□□□□ -0.35
USP4-205ENST00000431357 LAMB2P55268 1798 aa12.84□□□□□ -0.35
USP4-205ENST00000431357 COL22A1Q8NFW1 1626 aaPredicted RBP12.84□□□□□ -0.35
USP4-205ENST00000431357 BCL9LQ86UU0 1499 aa12.84□□□□□ -0.35
USP4-205ENST00000431357 SYNRGQ9UMZ2 1314 aa12.84□□□□□ -0.35
USP4-205ENST00000431357 CUL4BQ13620 913 aa12.84□□□□□ -0.35
USP4-205ENST00000431357 HSP90AA4PQ58FG1 418 aa12.84□□□□□ -0.35
USP4-205ENST00000431357 USP49Q70CQ1 688 aa12.84□□□□□ -0.35
USP4-205ENST00000431357 SDR42E1Q8WUS8 393 aa12.84□□□□□ -0.35
USP4-205ENST00000431357 MRFAP1Q9Y605 127 aa12.84□□□□□ -0.35
USP4-205ENST00000431357 FANCGO15287 622 aa12.83□□□□□ -0.35
USP4-205ENST00000431357 PNMA6AP0CW24 399 aaPredicted RBP12.83□□□□□ -0.35
USP4-205ENST00000431357 CRKLP46109 303 aaKnown RBP12.83□□□□□ -0.35
USP4-205ENST00000431357 TRAPPC10P48553 1259 aa12.83□□□□□ -0.35
USP4-205ENST00000431357 DPYDQ12882 1025 aa12.83□□□□□ -0.35
USP4-205ENST00000431357 TUBB2AQ13885 445 aa12.83□□□□□ -0.35
USP4-205ENST00000431357 CDKAL1Q5VV42 579 aa12.83□□□□□ -0.35
USP4-205ENST00000431357 TOGARAM2Q6ZUX3 1019 aa12.83□□□□□ -0.35
USP4-205ENST00000431357 APTXQ7Z2E3 356 aaKnown RBP12.83□□□□□ -0.35
USP4-205ENST00000431357 SYMPKQ92797 1274 aaKnown RBP12.83□□□□□ -0.35
USP4-205ENST00000431357 TUBB2BQ9BVA1 445 aa12.83□□□□□ -0.35
USP4-205ENST00000431357 ABCF2Q9UG63 623 aa12.83□□□□□ -0.35
USP4-205ENST00000431357 NIP7Q9Y221 180 aaKnown RBP eCLIP12.83□□□□□ -0.35
USP4-205ENST00000431357 ZNF652Q9Y2D9 606 aa12.83□□□□□ -0.35
USP4-205ENST00000431357 V9GY48 417 aaPredicted RBP12.83□□□□□ -0.35
USP4-205ENST00000431357 PHLPP1O60346 1717 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 ITIH6Q6UXX5 1313 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 PBX1P40424 430 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 PPP2R3AQ06190 1150 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 PTPN21Q16825 1174 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 CAVIN4Q5BKX8 364 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 TTC38Q5R3I4 469 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 JAKMIP3Q5VZ66 844 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 ADGRA1Q86SQ6 560 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 KIFC2Q96AC6 838 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 ADD3Q9UEY8 706 aaKnown RBP12.83□□□□□ -0.36
USP4-205ENST00000431357 DUOX1Q9NRD9 1551 aa12.83□□□□□ -0.36
USP4-205ENST00000431357 RREB1Q92766 1687 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 MYH6P13533 1939 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 ATP6V1AP38606 617 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 AFMP43652 599 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 TUBB4BP68371 445 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 ATP2C1P98194 919 aaPredicted RBP12.82□□□□□ -0.36
USP4-205ENST00000431357 SPAG1Q07617 926 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 TROAPQ12815 778 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 TMTC3Q6ZXV5 915 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 CNGA4Q8IV77 575 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 ANKRD18AQ8IVF6 992 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 FAM177A1Q8N128 213 aaPredicted RBP12.82□□□□□ -0.36
USP4-205ENST00000431357 IGSF22Q8N9C0 903 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 IQUBQ8NA54 791 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 RABGGTAQ92696 567 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 TNFRSF25Q93038 417 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 SHISA4Q96DD7 197 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 EPSTI1Q96J88 318 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 WDR24Q96S15 920 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 A0A087X0B3 334 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 PPP1R3GB7ZBB8 358 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 ORC4O43929 436 aa12.82□□□□□ -0.36
USP4-205ENST00000431357 IGSF3O75054 1194 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms