RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZSCAN31Q96LW9 406 aaPredicted RBP11.83□□□□□ -0.52
CD44-207ENST00000425428 ZKSCAN3Q9BRR0 538 aa11.83□□□□□ -0.52
CD44-207ENST00000425428 ALDH8A1Q9H2A2 487 aaPredicted RBP11.83□□□□□ -0.52
CD44-207ENST00000425428 GOPCQ9HD26 462 aa11.83□□□□□ -0.52
CD44-207ENST00000425428 ZBTB21Q9ULJ3 1066 aa11.83□□□□□ -0.52
CD44-207ENST00000425428 ISY1Q9ULR0 285 aaKnown RBP11.83□□□□□ -0.52
CD44-207ENST00000425428 TRAF5O00463 557 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 KIF3CO14782 793 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 DHX16O60231 1041 aaKnown RBP11.82□□□□□ -0.52
CD44-207ENST00000425428 USP2O75604 605 aaPredicted RBP11.82□□□□□ -0.52
CD44-207ENST00000425428 TOP1P11387 765 aaKnown RBP11.82□□□□□ -0.52
CD44-207ENST00000425428 SLC10A4Q96EP9 437 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 DNAJC18Q9H819 358 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 CLIP2Q9UDT6 1046 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 ZNF112Q9UJU3 913 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 PLIN4Q96Q06 1357 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 PAPPA2Q9BXP8 1791 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 CCDC196A0A1B0GTZ2 297 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 KIF5BP33176 963 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 USP14P54578 494 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 EXOSC10Q01780 885 aaKnown RBP11.82□□□□□ -0.52
CD44-207ENST00000425428 EVX2Q03828 476 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 SEPT2Q15019 361 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 NOL9Q5SY16 702 aaKnown RBP11.82□□□□□ -0.52
CD44-207ENST00000425428 CYB5R4Q7L1T6 521 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 CDAN1Q8IWY9 1227 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 CTCFLQ8NI51 663 aaPredicted RBP11.82□□□□□ -0.52
CD44-207ENST00000425428 BRF1Q92994 677 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 CEP95Q96GE4 821 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 LRRC2Q9BYS8 371 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 SH2B1Q9NRF2 756 aaPredicted RBP11.82□□□□□ -0.52
CD44-207ENST00000425428 MTMR4Q9NYA4 1195 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 NYAP2Q9P242 653 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 SYNPO2Q9UMS6 1093 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 LIMCH1Q9UPQ0 1083 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 TAF6LQ9Y6J9 622 aa11.82□□□□□ -0.52
CD44-207ENST00000425428 PHF20L1A8MW92 1017 aa11.81□□□□□ -0.52
CD44-207ENST00000425428 SMIM22K7EJ46 135 aa11.81□□□□□ -0.52
CD44-207ENST00000425428 SH2B2O14492 632 aaPredicted RBP11.81□□□□□ -0.52
CD44-207ENST00000425428 CPA1P15085 419 aa11.81□□□□□ -0.52
CD44-207ENST00000425428 PPP2R5BQ15173 497 aa11.81□□□□□ -0.52
CD44-207ENST00000425428 MAP3K11Q16584 847 aa11.81□□□□□ -0.52
CD44-207ENST00000425428 FBXL16Q8N461 479 aa11.81□□□□□ -0.52
CD44-207ENST00000425428 ENAHQ8N8S7 591 aaPredicted RBP11.81□□□□□ -0.52
CD44-207ENST00000425428 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.81□□□□□ -0.52
CD44-207ENST00000425428 TCEANC2Q96MN5 208 aa11.81□□□□□ -0.52
CD44-207ENST00000425428 TMOD4Q9NZQ9 345 aa11.81□□□□□ -0.52
CD44-207ENST00000425428 KLF18A0A0U1RQI7 1052 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 CPLX1O14810 134 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 ZBTB43O43298 467 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 ITGBL1O95965 494 aaPredicted RBP11.8□□□□□ -0.52
CD44-207ENST00000425428 INPP5BP32019 993 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 AK2P54819 239 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 NOL8Q76FK4 1167 aaKnown RBP11.8□□□□□ -0.52
CD44-207ENST00000425428 ERO1BQ86YB8 467 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 PNMA1Q8ND90 353 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 IGDCC4Q8TDY8 1250 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 NUP133Q8WUM0 1156 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 ZKSCAN4Q969J2 545 aaPredicted RBP11.8□□□□□ -0.52
CD44-207ENST00000425428 KIF2CQ99661 725 aa11.8□□□□□ -0.52
CD44-207ENST00000425428 SLKQ9H2G2 1235 aaPredicted RBP11.8□□□□□ -0.52
CD44-207ENST00000425428 ABT1Q9ULW3 272 aaKnown RBP11.8□□□□□ -0.52
CD44-207ENST00000425428 C19orf81C9J6K1 198 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 USP17L10C9JJH3 530 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 UBE2Q2LH0YL09 131 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 DDAH1O94760 285 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 EEF2P13639 858 aaKnown RBP11.79□□□□□ -0.52
CD44-207ENST00000425428 GNAQP50148 359 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 PPATQ06203 517 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 VGLL4Q14135 290 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 SGMS1Q86VZ5 419 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 ZNF280CQ8ND82 737 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 ANKS1AQ92625 1134 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 ZNF274Q96GC6 653 aaPredicted RBP11.79□□□□□ -0.52
CD44-207ENST00000425428 LY9Q9HBG7 655 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 ZHX2Q9Y6X8 837 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 TMEM88BA6NKF7 163 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 GOLGA8BA8MQT2 603 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 NMT2O60551 498 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 CDKL5O76039 1030 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 PTPRAP18433 802 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 METAP2P50579 478 aaKnown RBP eCLIP11.79□□□□□ -0.52
CD44-207ENST00000425428 RCAN1P53805 252 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 HUNKP57058 714 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 ANTXR2P58335 489 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 APOBRQ0VD83 1088 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 ZNF654Q8IZM8 581 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 SNX21Q969T3 373 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 TMEM47Q9BQJ4 181 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 ELP3Q9H9T3 547 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 RBM28Q9NW13 759 aaKnown RBP11.79□□□□□ -0.52
CD44-207ENST00000425428 MTMR7Q9Y216 660 aa11.79□□□□□ -0.52
CD44-207ENST00000425428 PARP1P09874 1014 aaKnown RBP11.78□□□□□ -0.52
CD44-207ENST00000425428 AKAP17AQ02040 695 aaKnown RBP11.78□□□□□ -0.52
CD44-207ENST00000425428 IKQ13123 557 aaPredicted RBP11.78□□□□□ -0.52
CD44-207ENST00000425428 SEC23AQ15436 765 aa11.78□□□□□ -0.52
CD44-207ENST00000425428 USP17L2Q6R6M4 530 aa11.78□□□□□ -0.52
CD44-207ENST00000425428 MICU3Q86XE3 530 aa11.78□□□□□ -0.52
CD44-207ENST00000425428 LPAR1Q92633 364 aa11.78□□□□□ -0.52
CD44-207ENST00000425428 MKL1Q969V6 931 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms