RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 HMGB1P09429 215 aaKnown RBP15.79■□□□□ 0.12
PRPF39-202ENST00000424478 CCDC82Q8N4S0 544 aa15.79■□□□□ 0.12
PRPF39-202ENST00000424478 ZC3H15Q8WU90 426 aaKnown RBP15.79■□□□□ 0.12
PRPF39-202ENST00000424478 TMX3Q96JJ7 454 aa15.79■□□□□ 0.12
PRPF39-202ENST00000424478 HERC5Q9UII4 1024 aaKnown RBP15.79■□□□□ 0.12
PRPF39-202ENST00000424478 ST3GAL1Q11201 340 aa15.79■□□□□ 0.12
PRPF39-202ENST00000424478 IFIT1BQ5T764 474 aaKnown RBP15.79■□□□□ 0.12
PRPF39-202ENST00000424478 METTL16Q86W50 562 aaKnown RBP15.79■□□□□ 0.12
PRPF39-202ENST00000424478 ACER1Q8TDN7 264 aa15.79■□□□□ 0.12
PRPF39-202ENST00000424478 CPVLQ9H3G5 476 aa15.79■□□□□ 0.12
PRPF39-202ENST00000424478 UBE2Q2LH0YL09 131 aa15.79■□□□□ 0.12
PRPF39-202ENST00000424478 USP2O75604 605 aaPredicted RBP15.79■□□□□ 0.12
PRPF39-202ENST00000424478 CCDC83Q8IWF9 413 aa15.79■□□□□ 0.12
PRPF39-202ENST00000424478 HSCBQ8IWL3 235 aa15.79■□□□□ 0.12
PRPF39-202ENST00000424478 NEDD1Q8NHV4 660 aa15.79■□□□□ 0.12
PRPF39-202ENST00000424478 GOLGA8BA8MQT2 603 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 LDHDQ86WU2 507 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 SIAH1Q8IUQ4 282 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 ZNF287Q9HBT7 754 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 ZBTB21Q9ULJ3 1066 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 COL2A1P02458 1487 aaPredicted RBP15.78■□□□□ 0.12
PRPF39-202ENST00000424478 A0A1W2PRG0 241 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 ERICH2A1L162 156 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 KIF3CO14782 793 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 EEF2P13639 858 aaKnown RBP15.78■□□□□ 0.12
PRPF39-202ENST00000424478 CAP2P40123 477 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 SPICE1Q8N0Z3 855 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 TMEM47Q9BQJ4 181 aa15.78■□□□□ 0.12
PRPF39-202ENST00000424478 GOLGA8HP0CJ92 632 aa15.77■□□□□ 0.12
PRPF39-202ENST00000424478 MTMR4Q9NYA4 1195 aa15.77■□□□□ 0.12
PRPF39-202ENST00000424478 PIBF1Q8WXW3 757 aa15.77■□□□□ 0.12
PRPF39-202ENST00000424478 ATAD5Q96QE3 1844 aa15.77■□□□□ 0.12
PRPF39-202ENST00000424478 ISY1Q9ULR0 285 aaKnown RBP15.77■□□□□ 0.12
PRPF39-202ENST00000424478 CCDC69A6NI79 296 aa15.77■□□□□ 0.11
PRPF39-202ENST00000424478 K7ELQ4 463 aaPredicted RBP15.77■□□□□ 0.11
PRPF39-202ENST00000424478 ICA1Q05084 483 aa15.77■□□□□ 0.11
PRPF39-202ENST00000424478 MKRN3Q13064 507 aaKnown RBP15.77■□□□□ 0.11
PRPF39-202ENST00000424478 SUPT20HL1Q3ZLR7 823 aa15.77■□□□□ 0.11
PRPF39-202ENST00000424478 KLRG1Q96E93 195 aa15.77■□□□□ 0.11
PRPF39-202ENST00000424478 LIMCH1Q9UPQ0 1083 aa15.77■□□□□ 0.11
PRPF39-202ENST00000424478 HPS5Q9UPZ3 1129 aa15.77■□□□□ 0.11
PRPF39-202ENST00000424478 MYH4Q9Y623 1939 aa15.76■□□□□ 0.11
PRPF39-202ENST00000424478 PDIA3P30101 505 aaKnown RBP15.76■□□□□ 0.11
PRPF39-202ENST00000424478 SART3Q15020 963 aaKnown RBP15.76■□□□□ 0.11
PRPF39-202ENST00000424478 APOA5Q6Q788 366 aa15.76■□□□□ 0.11
PRPF39-202ENST00000424478 ZNF784Q8NCA9 323 aaPredicted RBP15.76■□□□□ 0.11
PRPF39-202ENST00000424478 NUP88Q99567 741 aaPredicted RBP15.76■□□□□ 0.11
PRPF39-202ENST00000424478 ZNF341Q9BYN7 854 aa15.76■□□□□ 0.11
PRPF39-202ENST00000424478 CELF2O95319 508 aaKnown RBP15.76■□□□□ 0.11
PRPF39-202ENST00000424478 ADD1P35611 737 aaKnown RBP15.76■□□□□ 0.11
PRPF39-202ENST00000424478 VGLL4Q14135 290 aa15.76■□□□□ 0.11
PRPF39-202ENST00000424478 SAMD1Q6SPF0 538 aaPredicted RBP15.76■□□□□ 0.11
PRPF39-202ENST00000424478 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.76■□□□□ 0.11
PRPF39-202ENST00000424478 TMEM87BQ96K49 555 aa15.76■□□□□ 0.11
PRPF39-202ENST00000424478 hCG_1642624A0A1W2PR95 340 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 TBC1D12O60347 775 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 PCP11498 1178 aaKnown RBP15.75■□□□□ 0.11
PRPF39-202ENST00000424478 CDC27P30260 824 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 SCRN1Q12765 414 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 KIAA1755Q5JYT7 1200 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 ZNF654Q8IZM8 581 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 ELP3Q9H9T3 547 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 CABP5Q9NP86 173 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 SLC12A7Q9Y666 1083 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 OTOFQ9HC10 1997 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 FRMPD2Q68DX3 1309 aaPredicted RBP15.75■□□□□ 0.11
PRPF39-202ENST00000424478 IGKV6D-41A0A0C4DH26 115 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 FOSBP53539 338 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 MAP3K10Q02779 954 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 DCAF15Q66K64 600 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 PNMA1Q8ND90 353 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 AGXT2Q9BYV1 514 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 SLKQ9H2G2 1235 aaPredicted RBP15.75■□□□□ 0.11
PRPF39-202ENST00000424478 TRIM75PA6NK02 468 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 ITGBL1O95965 494 aaPredicted RBP15.75■□□□□ 0.11
PRPF39-202ENST00000424478 CHADLQ6NUI6 762 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 USP17L2Q6R6M4 530 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 KAT14Q9H8E8 782 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 PPP2R3BQ9Y5P8 575 aa15.75■□□□□ 0.11
PRPF39-202ENST00000424478 JAK2O60674 1132 aa15.74■□□□□ 0.11
PRPF39-202ENST00000424478 CST9Q5W186 159 aa15.74■□□□□ 0.11
PRPF39-202ENST00000424478 TMEM179Q6ZVK1 233 aa15.74■□□□□ 0.11
PRPF39-202ENST00000424478 STAG2Q8N3U4 1231 aa15.74■□□□□ 0.11
PRPF39-202ENST00000424478 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.74■□□□□ 0.116e-6■■■■■ 27.5
PRPF39-202ENST00000424478 SNX21Q969T3 373 aa15.74■□□□□ 0.11
PRPF39-202ENST00000424478 DDX11Q96FC9 970 aa15.74■□□□□ 0.11
PRPF39-202ENST00000424478 GREB1LQ9C091 1923 aaPredicted RBP15.74■□□□□ 0.11
PRPF39-202ENST00000424478 USP17L5A8MUK1 530 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 PPP1R12BO60237 982 aaPredicted RBP15.73■□□□□ 0.11
PRPF39-202ENST00000424478 CCDC17Q96LX7 622 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 ZHX2Q9Y6X8 837 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 ZBTB43O43298 467 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 TTLL1O95922 423 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 HSP90AA1P07900 732 aaKnown RBP15.73■□□□□ 0.11
PRPF39-202ENST00000424478 PLEKHA8P1O95397 391 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 NF2P35240 595 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 KCTD1Q719H9 257 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 NBPF11Q86T75 865 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 PHKBQ93100 1093 aa15.73■□□□□ 0.11
PRPF39-202ENST00000424478 SNCAIPQ9Y6H5 919 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms