RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 USP17L24Q0WX57 530 aa25.72■■□□□ 1.71
PTPN4-202ENST00000420482 UBE3CQ15386 1083 aa25.72■■□□□ 1.71
PTPN4-202ENST00000420482 ARMT1Q9H993 441 aa25.72■■□□□ 1.71
PTPN4-202ENST00000420482 EMILIN3Q9NT22 766 aa25.72■■□□□ 1.71
PTPN4-202ENST00000420482 ECHDC1Q9NTX5 307 aa25.72■■□□□ 1.71
PTPN4-202ENST00000420482 MPHOSPH10O00566 681 aaKnown RBP25.71■■□□□ 1.71
PTPN4-202ENST00000420482 MBD4O95243 580 aa25.71■■□□□ 1.71
PTPN4-202ENST00000420482 MAPK4P31152 587 aa25.71■■□□□ 1.71
PTPN4-202ENST00000420482 FXR1P51114 621 aaKnown RBP eCLIP25.71■■□□□ 1.71
PTPN4-202ENST00000420482 ZYXQ15942 572 aaKnown RBP25.71■■□□□ 1.71
PTPN4-202ENST00000420482 U2AF1L4Q8WU68 220 aaKnown RBP25.71■■□□□ 1.71
PTPN4-202ENST00000420482 CWC22Q9HCG8 908 aaKnown RBP25.71■■□□□ 1.71
PTPN4-202ENST00000420482 GABPAQ06546 454 aa25.7■■□□□ 1.7
PTPN4-202ENST00000420482 SOCS4Q8WXH5 440 aa25.7■■□□□ 1.7
PTPN4-202ENST00000420482 UNC93B1Q9H1C4 597 aa25.7■■□□□ 1.7
PTPN4-202ENST00000420482 DCTPP1Q9H773 170 aa25.7■■□□□ 1.7
PTPN4-202ENST00000420482 HMGCRP04035 888 aa25.69■■□□□ 1.7
PTPN4-202ENST00000420482 CCNA1P78396 465 aa25.69■■□□□ 1.7
PTPN4-202ENST00000420482 NUDT12Q9BQG2 462 aa25.69■■□□□ 1.7
PTPN4-202ENST00000420482 HTATIP2Q9BUP3 242 aa25.69■■□□□ 1.7
PTPN4-202ENST00000420482 COLQQ9Y215 455 aaPredicted RBP25.69■■□□□ 1.7
PTPN4-202ENST00000420482 SMARCA5O60264 1052 aaPredicted RBP25.68■■□□□ 1.7
PTPN4-202ENST00000420482 SGPL1O95470 568 aa25.68■■□□□ 1.7
PTPN4-202ENST00000420482 ERVK-9P63128 1117 aa25.68■■□□□ 1.7
PTPN4-202ENST00000420482 ERVK-24P63145 666 aa25.68■■□□□ 1.7
PTPN4-202ENST00000420482 PAGR1Q9BTK6 254 aa25.68■■□□□ 1.7
PTPN4-202ENST00000420482 RABGAP1Q9Y3P9 1069 aa25.68■■□□□ 1.7
PTPN4-202ENST00000420482 H0YGN5 161 aa25.67■■□□□ 1.7
PTPN4-202ENST00000420482 TMEM179Q6ZVK1 233 aa25.67■■□□□ 1.7
PTPN4-202ENST00000420482 UBE2Q1Q7Z7E8 422 aa25.67■■□□□ 1.7
PTPN4-202ENST00000420482 TRMT44Q8IYL2 757 aaKnown RBP25.67■■□□□ 1.7
PTPN4-202ENST00000420482 RBPJLQ9UBG7 517 aa25.67■■□□□ 1.7
PTPN4-202ENST00000420482 GLRX3O76003 335 aaKnown RBP25.66■■□□□ 1.7
PTPN4-202ENST00000420482 TFRCP02786 760 aaKnown RBP25.66■■□□□ 1.7
PTPN4-202ENST00000420482 VCAM1P19320 739 aa25.66■■□□□ 1.7
PTPN4-202ENST00000420482 SEPT2Q15019 361 aa25.66■■□□□ 1.7
PTPN4-202ENST00000420482 LRRFIP1Q32MZ4 808 aaKnown RBP25.66■■□□□ 1.7
PTPN4-202ENST00000420482 CATSPERGQ6ZRH7 1159 aa25.66■■□□□ 1.7
PTPN4-202ENST00000420482 DEFB118Q96PH6 123 aa25.66■■□□□ 1.7
PTPN4-202ENST00000420482 SH2D4AQ9H788 454 aa25.66■■□□□ 1.7
PTPN4-202ENST00000420482 TXNRD2Q9NNW7 524 aa25.66■■□□□ 1.7
PTPN4-202ENST00000420482 GJD2Q9UKL4 321 aa25.66■■□□□ 1.7
PTPN4-202ENST00000420482 MYH7P12883 1935 aa25.65■■□□□ 1.7
PTPN4-202ENST00000420482 FARP2O94887 1054 aaPredicted RBP25.65■■□□□ 1.7
PTPN4-202ENST00000420482 ACER1Q8TDN7 264 aa25.65■■□□□ 1.7
PTPN4-202ENST00000420482 DPF3Q92784 378 aa25.65■■□□□ 1.7
PTPN4-202ENST00000420482 CCDC17Q96LX7 622 aa25.65■■□□□ 1.7
PTPN4-202ENST00000420482 PAK6Q9NQU5 681 aaPredicted RBP25.65■■□□□ 1.7
PTPN4-202ENST00000420482 SLC4A4Q9Y6R1 1079 aa25.65■■□□□ 1.7
PTPN4-202ENST00000420482 XRCC5P13010 732 aaKnown RBP25.64■■□□□ 1.7
PTPN4-202ENST00000420482 ARHGEF10LQ9HCE6 1279 aa25.64■■□□□ 1.7
PTPN4-202ENST00000420482 HMX1Q9NP08 348 aaPredicted RBP25.64■■□□□ 1.7
PTPN4-202ENST00000420482 RPTORQ8N122 1335 aa25.63■■□□□ 1.69
PTPN4-202ENST00000420482 PRKAB2O43741 272 aa25.63■■□□□ 1.69
PTPN4-202ENST00000420482 GUCY1A2P33402 732 aa25.63■■□□□ 1.69
PTPN4-202ENST00000420482 C12orf60Q5U649 245 aa25.63■■□□□ 1.69
PTPN4-202ENST00000420482 PLEKHH3Q7Z736 793 aa25.63■■□□□ 1.69
PTPN4-202ENST00000420482 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.63■■□□□ 1.69
PTPN4-202ENST00000420482 RPAP3Q9H6T3 665 aaPredicted RBP25.63■■□□□ 1.69
PTPN4-202ENST00000420482 ZBTB47Q9UFB7 747 aaPredicted RBP25.63■■□□□ 1.69
PTPN4-202ENST00000420482 ZFYP08048 801 aaPredicted RBP25.62■■□□□ 1.69
PTPN4-202ENST00000420482 CYP2D6P10635 497 aa25.62■■□□□ 1.69
PTPN4-202ENST00000420482 CYP2B6P20813 491 aa25.62■■□□□ 1.69
PTPN4-202ENST00000420482 RGS2P41220 211 aa25.62■■□□□ 1.69
PTPN4-202ENST00000420482 LBX2Q6XYB7 198 aa25.62■■□□□ 1.69
PTPN4-202ENST00000420482 GPR142Q7Z601 462 aa25.62■■□□□ 1.69
PTPN4-202ENST00000420482 KBTBD3Q8NAB2 608 aa25.62■■□□□ 1.69
PTPN4-202ENST00000420482 ALPK3Q96L96 1907 aa25.62■■□□□ 1.69
PTPN4-202ENST00000420482 USP17L12C9JPN9 530 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 USP17L21D6R901 530 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 ERC2O15083 957 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 Q3C1V9 767 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 SLFNL1Q499Z3 407 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 LPAR1Q92633 364 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 DYNLL2Q96FJ2 89 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 PUS7LQ9H0K6 701 aaKnown RBP25.61■■□□□ 1.69
PTPN4-202ENST00000420482 HOXC10Q9NYD6 342 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 ARPP21Q9UBL0 812 aaPredicted RBP25.61■■□□□ 1.69
PTPN4-202ENST00000420482 IVNS1ABPQ9Y6Y0 642 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 MYH8P13535 1937 aa25.61■■□□□ 1.69
PTPN4-202ENST00000420482 ZKSCAN1P17029 563 aaPredicted RBP25.6■■□□□ 1.69
PTPN4-202ENST00000420482 ICA1Q05084 483 aa25.6■■□□□ 1.69
PTPN4-202ENST00000420482 WDR78Q5VTH9 848 aa25.6■■□□□ 1.69
PTPN4-202ENST00000420482 SLC44A5Q8NCS7 719 aa25.6■■□□□ 1.69
PTPN4-202ENST00000420482 TANGO6Q9C0B7 1094 aa25.6■■□□□ 1.69
PTPN4-202ENST00000420482 PORCNQ9H237 461 aa25.6■■□□□ 1.69
PTPN4-202ENST00000420482 NR2E3Q9Y5X4 410 aa25.6■■□□□ 1.69
PTPN4-202ENST00000420482 PLXNB2O15031 1838 aa25.6■■□□□ 1.69
PTPN4-202ENST00000420482 TTC41PQ6P2S7 1318 aa25.6■■□□□ 1.69
PTPN4-202ENST00000420482 CDK8P49336 464 aa25.59■■□□□ 1.69
PTPN4-202ENST00000420482 RRP1P56182 461 aaKnown RBP25.59■■□□□ 1.69
PTPN4-202ENST00000420482 COG2Q14746 738 aa25.59■■□□□ 1.69
PTPN4-202ENST00000420482 C16orf86Q6ZW13 317 aa25.59■■□□□ 1.69
PTPN4-202ENST00000420482 ANKLE1Q8NAG6 615 aa25.59■■□□□ 1.69
PTPN4-202ENST00000420482 TRIB2Q92519 343 aa25.59■■□□□ 1.69
PTPN4-202ENST00000420482 APBA2Q99767 749 aa25.59■■□□□ 1.69
PTPN4-202ENST00000420482 CRISPLD2Q9H0B8 497 aa25.59■■□□□ 1.69
PTPN4-202ENST00000420482 PEX10O60683 326 aa25.58■■□□□ 1.69
PTPN4-202ENST00000420482 EVX2Q03828 476 aa25.58■■□□□ 1.69
PTPN4-202ENST00000420482 GIMAP6Q6P9H5 292 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms