RNA–Protein interactions for RNA: ENST00000419974.2

SHMT1P1-201, Transcript of serine hydroxymethyltransferase 1 (soluble) pseudogene 1, humanhuman

BASIC

Gene SHMT1P1, Length 1,312 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P1-201ENST00000419974 SCRN1Q12765 414 aa16.7■□□□□ 0.26
SHMT1P1-201ENST00000419974 TROAPQ12815 778 aa16.7■□□□□ 0.26
SHMT1P1-201ENST00000419974 RASA3Q14644 834 aa16.7■□□□□ 0.26
SHMT1P1-201ENST00000419974 IFIT1BQ5T764 474 aaKnown RBP16.7■□□□□ 0.26
SHMT1P1-201ENST00000419974 MAP1SQ66K74 1059 aaPredicted RBP16.7■□□□□ 0.26
SHMT1P1-201ENST00000419974 SYNE3Q6ZMZ3 975 aa16.7■□□□□ 0.26
SHMT1P1-201ENST00000419974 ZSCAN29Q8IWY8 852 aaPredicted RBP16.7■□□□□ 0.26
SHMT1P1-201ENST00000419974 GPHNQ9NQX3 736 aaPredicted RBP16.7■□□□□ 0.26
SHMT1P1-201ENST00000419974 FAM47AQ5JRC9 791 aa16.69■□□□□ 0.26
SHMT1P1-201ENST00000419974 CRACR2BQ8N4Y2 399 aaPredicted RBP16.69■□□□□ 0.26
SHMT1P1-201ENST00000419974 TRPM4Q8TD43 1214 aa16.69■□□□□ 0.26
SHMT1P1-201ENST00000419974 MKL1Q969V6 931 aa16.69■□□□□ 0.26
SHMT1P1-201ENST00000419974 DEFB129Q9H1M3 183 aa16.69■□□□□ 0.26
SHMT1P1-201ENST00000419974 VEZTQ9HBM0 779 aa16.69■□□□□ 0.26
SHMT1P1-201ENST00000419974 MTMR4Q9NYA4 1195 aa16.69■□□□□ 0.26
SHMT1P1-201ENST00000419974 HMGN5P82970 282 aaKnown RBP16.68■□□□□ 0.26
SHMT1P1-201ENST00000419974 CERKLQ49MI3 558 aaPredicted RBP16.68■□□□□ 0.26
SHMT1P1-201ENST00000419974 TMEM179Q6ZVK1 233 aa16.68■□□□□ 0.26
SHMT1P1-201ENST00000419974 CATIPQ7Z7H3 387 aa16.68■□□□□ 0.26
SHMT1P1-201ENST00000419974 ZNF654Q8IZM8 581 aa16.68■□□□□ 0.26
SHMT1P1-201ENST00000419974 TMEM39BQ9GZU3 492 aa16.68■□□□□ 0.26
SHMT1P1-201ENST00000419974 GREB1LQ9C091 1923 aaPredicted RBP16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 METAP2P50579 478 aaKnown RBP eCLIP16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 RBM26Q5T8P6 1007 aaKnown RBP16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 CCDC83Q8IWF9 413 aa16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 STK11IPQ8N1F8 1099 aa16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 FANCBQ8NB91 859 aa16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 ZKSCAN3Q9BRR0 538 aa16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 LARP6Q9BRS8 491 aaKnown RBP16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 TRIM34Q9BYJ4 488 aa16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 KANSL2Q9H9L4 492 aa16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 SENP2Q9HC62 589 aa16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 FAM217BQ9NTX9 383 aaPredicted RBP16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 RBM28Q9NW13 759 aaKnown RBP16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 CHMP5Q9NZZ3 219 aa16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 NYAP2Q9P242 653 aa16.67■□□□□ 0.26
SHMT1P1-201ENST00000419974 GOLGA8BA8MQT2 603 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 CDKL5O76039 1030 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 TTLL1O95922 423 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 TOP1P11387 765 aaKnown RBP16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 AKR1B1P15121 316 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 NUCB2P80303 420 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 NTRK3Q16288 839 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 SLC4A8Q2Y0W8 1093 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 ANGEL2Q5VTE6 544 aaKnown RBP16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 NFXL1Q6ZNB6 911 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 NOL8Q76FK4 1167 aaKnown RBP16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 NECAB1Q8N987 351 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 NSUN7Q8NE18 718 aaKnown RBP16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 CEP95Q96GE4 821 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 ZNF112Q9UJU3 913 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 SMC3Q9UQE7 1217 aa16.66■□□□□ 0.26
SHMT1P1-201ENST00000419974 PHF20L1A8MW92 1017 aa16.65■□□□□ 0.26
SHMT1P1-201ENST00000419974 CTDNEP1O95476 244 aa16.65■□□□□ 0.26
SHMT1P1-201ENST00000419974 IFNAR1P17181 557 aa16.65■□□□□ 0.26
SHMT1P1-201ENST00000419974 PDCP20941 246 aa16.65■□□□□ 0.26
SHMT1P1-201ENST00000419974 SMARCA1P28370 1054 aa16.65■□□□□ 0.26
SHMT1P1-201ENST00000419974 CPLX2Q6PUV4 134 aaKnown RBP16.65■□□□□ 0.26
SHMT1P1-201ENST00000419974 TMEM47Q9BQJ4 181 aa16.65■□□□□ 0.26
SHMT1P1-201ENST00000419974 KAT14Q9H8E8 782 aa16.65■□□□□ 0.26
SHMT1P1-201ENST00000419974 KIF3AQ9Y496 699 aa16.65■□□□□ 0.26
SHMT1P1-201ENST00000419974 STK36Q9NRP7 1315 aa16.64■□□□□ 0.25
SHMT1P1-201ENST00000419974 RASSF10A6NK89 507 aa16.64■□□□□ 0.25
SHMT1P1-201ENST00000419974 NMT2O60551 498 aa16.64■□□□□ 0.25
SHMT1P1-201ENST00000419974 SNHG28P0DPA3 235 aa16.64■□□□□ 0.25
SHMT1P1-201ENST00000419974 ABCB5Q2M3G0 1257 aa16.64■□□□□ 0.25
SHMT1P1-201ENST00000419974 SUPT20HL1Q3ZLR7 823 aa16.64■□□□□ 0.25
SHMT1P1-201ENST00000419974 DCAF15Q66K64 600 aa16.64■□□□□ 0.25
SHMT1P1-201ENST00000419974 PNMA1Q8ND90 353 aa16.64■□□□□ 0.25
SHMT1P1-201ENST00000419974 GGA3Q9NZ52 723 aa16.64■□□□□ 0.25
SHMT1P1-201ENST00000419974 ASTN2O75129 1339 aaPredicted RBP16.63■□□□□ 0.25
SHMT1P1-201ENST00000419974 GOLGA8AA7E2F4 631 aa16.63■□□□□ 0.25
SHMT1P1-201ENST00000419974 KIF5BP33176 963 aa16.63■□□□□ 0.25
SHMT1P1-201ENST00000419974 GUCY1A2P33402 732 aa16.63■□□□□ 0.25
SHMT1P1-201ENST00000419974 CAP2P40123 477 aa16.63■□□□□ 0.25
SHMT1P1-201ENST00000419974 GNAQP50148 359 aa16.63■□□□□ 0.25
SHMT1P1-201ENST00000419974 RTN1Q16799 776 aa16.63■□□□□ 0.25
SHMT1P1-201ENST00000419974 LZTS2Q9BRK4 669 aa16.63■□□□□ 0.25
SHMT1P1-201ENST00000419974 CABP5Q9NP86 173 aa16.63■□□□□ 0.25
SHMT1P1-201ENST00000419974 CTNND1O60716 968 aaKnown RBP16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 ASNSP08243 561 aa16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 GJB2P29033 226 aa16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 CDC27P30260 824 aa16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 CCT2P78371 535 aaKnown RBP16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 STK3Q13188 491 aa16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 DEFB115Q30KQ5 88 aa16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 CDC37L1Q7L3B6 337 aa16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 MICU3Q86XE3 530 aa16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 FAM177A1Q8N128 213 aaPredicted RBP16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 DCPSQ96C86 337 aaKnown RBP16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 STX8Q9UNK0 236 aa16.62■□□□□ 0.25
SHMT1P1-201ENST00000419974 PALM3A6NDB9 673 aaPredicted RBP16.61■□□□□ 0.25
SHMT1P1-201ENST00000419974 CPLX1O14810 134 aa16.61■□□□□ 0.25
SHMT1P1-201ENST00000419974 ADD1P35611 737 aaKnown RBP16.61■□□□□ 0.25
SHMT1P1-201ENST00000419974 FUT2Q10981 343 aa16.61■□□□□ 0.25
SHMT1P1-201ENST00000419974 GRM4Q14833 912 aa16.61■□□□□ 0.25
SHMT1P1-201ENST00000419974 RAB3GAP1Q15042 981 aa16.61■□□□□ 0.25
SHMT1P1-201ENST00000419974 CST9Q5W186 159 aa16.61■□□□□ 0.25
SHMT1P1-201ENST00000419974 CLEC17AQ6ZS10 378 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms