RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 LRRC4CQ9HCJ2 640 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 GMIPQ9P107 970 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 PPT2Q9UMR5 302 aa6.98□□□□□ -1.29
VPS54-204ENST00000416400 UPK3BL1B0FP48 263 aa6.97□□□□□ -1.29
VPS54-204ENST00000416400 UPK3BL2E5RIL1 263 aa6.97□□□□□ -1.29
VPS54-204ENST00000416400 CYP26A1O43174 497 aa6.97□□□□□ -1.29
VPS54-204ENST00000416400 GBP1P32455 592 aa6.97□□□□□ -1.29
VPS54-204ENST00000416400 ETFBP38117 255 aa6.97□□□□□ -1.29
VPS54-204ENST00000416400 LETMD1Q6P1Q0 360 aa6.97□□□□□ -1.29
VPS54-204ENST00000416400 ANAPC16Q96DE5 110 aa6.97□□□□□ -1.29
VPS54-204ENST00000416400 ZSWIM4Q9H7M6 989 aa6.97□□□□□ -1.29
VPS54-204ENST00000416400 PIM2Q9P1W9 311 aa6.97□□□□□ -1.29
VPS54-204ENST00000416400 CHURC1-FNTBB4DL54 471 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 ADAM23O75077 832 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 LEFTY1O75610 366 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 ETV3P41162 512 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 ANKS3Q6ZW76 656 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 ZDHHC13Q8IUH4 622 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 SLFN12Q8IYM2 578 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 CYB5D2Q8WUJ1 264 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 GATA6Q92908 595 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 SHDQ96IW2 340 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 CCDC74BQ96LY2 380 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 PSMG3-AS1Q96PY0 264 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 TRIM55Q9BYV6 548 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 PRDM5Q9NQX1 630 aaPredicted RBP6.96□□□□□ -1.3
VPS54-204ENST00000416400 PRKAG3Q9UGI9 489 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 ZNRF3Q9ULT6 936 aa6.96□□□□□ -1.3
VPS54-204ENST00000416400 R3HCC1Q9Y3T6 440 aaKnown RBP6.96□□□□□ -1.3
VPS54-204ENST00000416400 SLC22A31A6NKX4 558 aa6.95□□□□□ -1.3
VPS54-204ENST00000416400 GNAT3A8MTJ3 354 aa6.95□□□□□ -1.3
VPS54-204ENST00000416400 EIF6P56537 245 aaKnown RBP6.95□□□□□ -1.3
VPS54-204ENST00000416400 ARSHQ5FYA8 562 aa6.95□□□□□ -1.3
VPS54-204ENST00000416400 INTS5Q6P9B9 1019 aaKnown RBP6.95□□□□□ -1.3
VPS54-204ENST00000416400 GIMAP6Q6P9H5 292 aa6.95□□□□□ -1.3
VPS54-204ENST00000416400 TMEM40Q8WWA1 233 aa6.95□□□□□ -1.3
VPS54-204ENST00000416400 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.94□□□□□ -1.3
VPS54-204ENST00000416400 U2SURPO15042 1029 aaKnown RBP6.94□□□□□ -1.3
VPS54-204ENST00000416400 COBLO75128 1261 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 SLITRK5O94991 958 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 CANXP27824 592 aaKnown RBP6.94□□□□□ -1.3
VPS54-204ENST00000416400 BMS1Q14692 1282 aaKnown RBP6.94□□□□□ -1.3
VPS54-204ENST00000416400 NFE2L2Q16236 605 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 TNNI3KQ59H18 835 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 OVOS1Q6IE37 1185 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 NLRC3Q7RTR2 1065 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 CDH24Q86UP0 819 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 OR6P1Q8NGX9 317 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 HNRNPLLQ8WVV9 542 aaKnown RBP6.94□□□□□ -1.3
VPS54-204ENST00000416400 COX4I2Q96KJ9 171 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 PIF1Q9H611 641 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 RNF112Q9ULX5 631 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 CEP131Q9UPN4 1083 aa6.94□□□□□ -1.3
VPS54-204ENST00000416400 TMA7Q9Y2S6 64 aaKnown RBP6.94□□□□□ -1.3
VPS54-204ENST00000416400 TGFB1P01137 390 aa6.93□□□□□ -1.3
VPS54-204ENST00000416400 GIPRP48546 466 aa6.93□□□□□ -1.3
VPS54-204ENST00000416400 SERINC3Q13530 473 aa6.93□□□□□ -1.3
VPS54-204ENST00000416400 SFRP5Q5T4F7 317 aa6.93□□□□□ -1.3
VPS54-204ENST00000416400 SHISA5Q8N114 240 aa6.93□□□□□ -1.3
VPS54-204ENST00000416400 ATG4CQ96DT6 458 aa6.93□□□□□ -1.3
VPS54-204ENST00000416400 KIF2CQ99661 725 aa6.93□□□□□ -1.3
VPS54-204ENST00000416400 SIRPGQ9P1W8 387 aa6.93□□□□□ -1.3
VPS54-204ENST00000416400 MAPK8IP1Q9UQF2 711 aa6.93□□□□□ -1.3
VPS54-204ENST00000416400 MEIS3P2A8K0S8 358 aa6.92□□□□□ -1.3
VPS54-204ENST00000416400 FAM155AB1AL88 458 aaPredicted RBP6.92□□□□□ -1.3
VPS54-204ENST00000416400 IGF2BP3O00425 579 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS54-204ENST00000416400 SMAD7O15105 426 aaKnown RBP6.92□□□□□ -1.3
VPS54-204ENST00000416400 KLF4O43474 513 aa6.92□□□□□ -1.3
VPS54-204ENST00000416400 FOSL1P15407 271 aa6.92□□□□□ -1.3
VPS54-204ENST00000416400 RAB33AQ14088 237 aa6.92□□□□□ -1.3
VPS54-204ENST00000416400 CDCP2Q5VXM1 449 aa6.92□□□□□ -1.3
VPS54-204ENST00000416400 MRFAP1L1Q96HT8 127 aa6.92□□□□□ -1.3
VPS54-204ENST00000416400 TM9SF2Q99805 663 aa6.92□□□□□ -1.3
VPS54-204ENST00000416400 CNNM2Q9H8M5 875 aa6.92□□□□□ -1.3
VPS54-204ENST00000416400 CDK11AQ9UQ88 783 aaPredicted RBP6.92□□□□□ -1.3
VPS54-204ENST00000416400 PRR19A6NJB7 356 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 RGS13O14921 159 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 CBX7O95931 251 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 EOMESO95936 686 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 NME1P15531 152 aaKnown RBP6.91□□□□□ -1.3
VPS54-204ENST00000416400 CCNFP41002 786 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 ZMYM1Q5SVZ6 1142 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 LSRQ86X29 649 aaPredicted RBP6.91□□□□□ -1.3
VPS54-204ENST00000416400 FAM169BQ8N8A8 192 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 RBBP8NLQ8NC74 664 aaPredicted RBP6.91□□□□□ -1.3
VPS54-204ENST00000416400 RIN3Q8TB24 985 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 BAHD1Q8TBE0 780 aaPredicted RBP6.91□□□□□ -1.3
VPS54-204ENST00000416400 MKL1Q969V6 931 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS54-204ENST00000416400 ANTXR1Q9H6X2 564 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 MKNK2Q9HBH9 465 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 ACTR10Q9NZ32 417 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 KCNH3Q9ULD8 1083 aa6.91□□□□□ -1.3
VPS54-204ENST00000416400 SCO2A0A1W2PP80 73 aa6.9□□□□□ -1.3
VPS54-204ENST00000416400 DNAJA2O60884 412 aa6.9□□□□□ -1.3
VPS54-204ENST00000416400 ITIH2P19823 946 aa6.9□□□□□ -1.3
VPS54-204ENST00000416400 SSTR4P31391 388 aa6.9□□□□□ -1.3
VPS54-204ENST00000416400 KIR3DL1P43629 444 aa6.9□□□□□ -1.3
VPS54-204ENST00000416400 RNF4P78317 190 aa6.9□□□□□ -1.3
VPS54-204ENST00000416400 XP32Q5T750 250 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms