RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 MKRN3Q13064 507 aaKnown RBP17.18■□□□□ 0.34
USP4-203ENST00000415188 GRIK5Q16478 980 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 CPLX2Q6PUV4 134 aaKnown RBP17.18■□□□□ 0.34
USP4-203ENST00000415188 CCDC73Q6ZRK6 1079 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 CHST3Q7LGC8 479 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 C8orf76Q96K31 380 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 STRBPQ96SI9 672 aaKnown RBP17.18■□□□□ 0.34
USP4-203ENST00000415188 VEZTQ9HBM0 779 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 SAGE1Q9NXZ1 904 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 RTEL1Q9NZ71 1219 aa17.18■□□□□ 0.34
USP4-203ENST00000415188 TTF2Q9UNY4 1162 aaKnown RBP17.18■□□□□ 0.34
USP4-203ENST00000415188 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.18■□□□□ 0.34
USP4-203ENST00000415188 A0A1W2PQ27 194 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 A0A1W2PQ64 194 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 A0A1W2PQD8 194 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 PATL2C9JE40 543 aaKnown RBP17.17■□□□□ 0.34
USP4-203ENST00000415188 SH2B2O14492 632 aaPredicted RBP17.17■□□□□ 0.34
USP4-203ENST00000415188 MYO1BO43795 1136 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 NR1I2O75469 434 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 YEATS4O95619 227 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 CHAF1AQ13111 956 aaPredicted RBP17.17■□□□□ 0.34
USP4-203ENST00000415188 VPS37DQ86XT2 251 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 MTA3Q9BTC8 594 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 MCOLN1Q9GZU1 580 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 ORC3Q9UBD5 711 aaPredicted RBP17.17■□□□□ 0.34
USP4-203ENST00000415188 SSC5DA1L4H1 1573 aa17.17■□□□□ 0.34
USP4-203ENST00000415188 COL1A1P02452 1464 aaPredicted RBP17.16■□□□□ 0.34
USP4-203ENST00000415188 BCAMP50895 628 aa17.16■□□□□ 0.34
USP4-203ENST00000415188 ARMC9Q7Z3E5 817 aa17.16■□□□□ 0.34
USP4-203ENST00000415188 FBXO18Q8NFZ0 1043 aa17.16■□□□□ 0.34
USP4-203ENST00000415188 KCNG4Q8TDN1 519 aa17.16■□□□□ 0.34
USP4-203ENST00000415188 USP28Q96RU2 1077 aa17.16■□□□□ 0.34
USP4-203ENST00000415188 NBPF3Q9H094 633 aa17.16■□□□□ 0.34
USP4-203ENST00000415188 CNNM2Q9H8M5 875 aa17.16■□□□□ 0.34
USP4-203ENST00000415188 NID2Q14112 1375 aa17.15■□□□□ 0.34
USP4-203ENST00000415188 FAM160A1Q05DH4 1040 aa17.15■□□□□ 0.34
USP4-203ENST00000415188 CAMK4Q16566 473 aa17.15■□□□□ 0.34
USP4-203ENST00000415188 LDLRAD1Q5T700 205 aa17.15■□□□□ 0.34
USP4-203ENST00000415188 SGMS1Q86VZ5 419 aa17.15■□□□□ 0.34
USP4-203ENST00000415188 TBC1D10CQ8IV04 446 aa17.15■□□□□ 0.34
USP4-203ENST00000415188 CCAR1Q8IX12 1150 aaKnown RBP17.15■□□□□ 0.34
USP4-203ENST00000415188 POLR3EQ9NVU0 708 aa17.15■□□□□ 0.34
USP4-203ENST00000415188 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.15■□□□□ 0.34
USP4-203ENST00000415188 ECM29Q5VYK3 1845 aa17.14■□□□□ 0.34
USP4-203ENST00000415188 APPP05067 770 aa17.14■□□□□ 0.33
USP4-203ENST00000415188 DGKZQ13574 1117 aa17.14■□□□□ 0.33
USP4-203ENST00000415188 RASGRF1Q13972 1273 aa17.14■□□□□ 0.33
USP4-203ENST00000415188 ANO6Q4KMQ2 910 aa17.14■□□□□ 0.33
USP4-203ENST00000415188 CAVIN4Q5BKX8 364 aa17.14■□□□□ 0.33
USP4-203ENST00000415188 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.14■□□□□ 0.33
USP4-203ENST00000415188 NACAP1Q9BZK3 213 aa17.14■□□□□ 0.33
USP4-203ENST00000415188 KRT23Q9C075 422 aa17.14■□□□□ 0.33
USP4-203ENST00000415188 GPHNQ9NQX3 736 aaPredicted RBP17.14■□□□□ 0.33
USP4-203ENST00000415188 SERPINA10Q9UK55 444 aa17.14■□□□□ 0.33
USP4-203ENST00000415188 PPP2R3BQ9Y5P8 575 aa17.14■□□□□ 0.33
USP4-203ENST00000415188 STK36Q9NRP7 1315 aa17.13■□□□□ 0.33
USP4-203ENST00000415188 CCDC85CA6NKD9 419 aa17.13■□□□□ 0.33
USP4-203ENST00000415188 KINO60870 393 aaKnown RBP17.13■□□□□ 0.33
USP4-203ENST00000415188 LIFRP42702 1097 aa17.13■□□□□ 0.33
USP4-203ENST00000415188 CRKP46108 304 aa17.13■□□□□ 0.33
USP4-203ENST00000415188 RASA3Q14644 834 aa17.13■□□□□ 0.33
USP4-203ENST00000415188 STX1AQ16623 288 aa17.13■□□□□ 0.33
USP4-203ENST00000415188 NBPF12Q5TAG4 269 aaPredicted RBP17.13■□□□□ 0.33
USP4-203ENST00000415188 CKAP2LQ8IYA6 745 aa17.13■□□□□ 0.33
USP4-203ENST00000415188 REM2Q8IYK8 340 aaPredicted RBP17.13■□□□□ 0.33
USP4-203ENST00000415188 NAPBQ9H115 298 aa17.13■□□□□ 0.33
USP4-203ENST00000415188 TDRD3Q9H7E2 651 aaKnown RBP17.13■□□□□ 0.33
USP4-203ENST00000415188 CBX8Q9HC52 389 aa17.13■□□□□ 0.33
USP4-203ENST00000415188 ZNF70Q9UC06 446 aaPredicted RBP17.13■□□□□ 0.33
USP4-203ENST00000415188 METAP2P50579 478 aaKnown RBP eCLIP17.12■□□□□ 0.33
USP4-203ENST00000415188 FOSBP53539 338 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 SPDYE2Q495Y8 402 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 ADALQ6DHV7 355 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 MAGEB6Q8N7X4 407 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 ENGASEQ8NFI3 743 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 PIBF1Q8WXW3 757 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 MRPS27Q92552 414 aaKnown RBP17.12■□□□□ 0.33
USP4-203ENST00000415188 MBD4O95243 580 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 RCAN1P53805 252 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 STK38Q15208 465 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 MYSM1Q5VVJ2 828 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 CYB5R4Q7L1T6 521 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 CDAN1Q8IWY9 1227 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 IFNL3Q8IZI9 196 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 FSIP1Q8NA03 581 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 CLMNQ96JQ2 1002 aa17.12■□□□□ 0.33
USP4-203ENST00000415188 GNL3LQ9NVN8 582 aaKnown RBP17.12■□□□□ 0.33
USP4-203ENST00000415188 ZBTB43O43298 467 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 TBC1D8O95759 1140 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 ME1P48163 572 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 ZNF165P49910 485 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 SNW1Q13573 536 aaKnown RBP17.11■□□□□ 0.33
USP4-203ENST00000415188 SUPT20HL1Q3ZLR7 823 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 SPRYD7Q5W111 196 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 APOA5Q6Q788 366 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 LINC00301Q8NCQ3 95 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 IGDCC4Q8TDY8 1250 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 STAG1Q8WVM7 1258 aa17.11■□□□□ 0.33
USP4-203ENST00000415188 RNF41Q9H4P4 317 aaPredicted RBP17.11■□□□□ 0.33
USP4-203ENST00000415188 TCP10L2B9ZVM9 353 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms