RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 SGSM2O43147 1006 aa17.37■□□□□ 0.37
LIMS1-206ENST00000414829 CDC45O75419 566 aa17.37■□□□□ 0.37
LIMS1-206ENST00000414829 RASA1P20936 1047 aa17.37■□□□□ 0.37
LIMS1-206ENST00000414829 SEPT2Q15019 361 aa17.37■□□□□ 0.37
LIMS1-206ENST00000414829 PTPN18Q99952 460 aa17.37■□□□□ 0.37
LIMS1-206ENST00000414829 PDHXO00330 501 aa17.36■□□□□ 0.37
LIMS1-206ENST00000414829 ORC4O43929 436 aa17.36■□□□□ 0.37
LIMS1-206ENST00000414829 TSPY3P0CV98 308 aa17.36■□□□□ 0.37
LIMS1-206ENST00000414829 TSPY8P0CW00 308 aa17.36■□□□□ 0.37
LIMS1-206ENST00000414829 AKR1B1P15121 316 aa17.36■□□□□ 0.37
LIMS1-206ENST00000414829 HMGCS2P54868 508 aa17.36■□□□□ 0.37
LIMS1-206ENST00000414829 FAM43AQ8N2R8 423 aa17.36■□□□□ 0.37
LIMS1-206ENST00000414829 GTF3C2Q8WUA4 911 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-206ENST00000414829 LPAR1Q92633 364 aa17.36■□□□□ 0.37
LIMS1-206ENST00000414829 C12orf42Q96LP6 360 aa17.36■□□□□ 0.37
LIMS1-206ENST00000414829 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-206ENST00000414829 U3KPZ7 1027 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-206ENST00000414829 OSBPP22059 807 aa17.35■□□□□ 0.37
LIMS1-206ENST00000414829 LBX1P52954 281 aa17.35■□□□□ 0.37
LIMS1-206ENST00000414829 EVX2Q03828 476 aa17.35■□□□□ 0.37
LIMS1-206ENST00000414829 CRHR2Q13324 411 aa17.35■□□□□ 0.37
LIMS1-206ENST00000414829 MOGSQ13724 837 aa17.35■□□□□ 0.37
LIMS1-206ENST00000414829 ARHGEF6Q15052 776 aa17.35■□□□□ 0.37
LIMS1-206ENST00000414829 CCDC84Q86UT8 332 aaPredicted RBP17.35■□□□□ 0.37
LIMS1-206ENST00000414829 SMCR8Q8TEV9 937 aaPredicted RBP17.35■□□□□ 0.37
LIMS1-206ENST00000414829 STAG1Q8WVM7 1258 aa17.35■□□□□ 0.37
LIMS1-206ENST00000414829 TSPY2A6NKD2 308 aa17.34■□□□□ 0.37
LIMS1-206ENST00000414829 TLR2O60603 784 aa17.34■□□□□ 0.37
LIMS1-206ENST00000414829 IRX3P78415 501 aaPredicted RBP17.34■□□□□ 0.37
LIMS1-206ENST00000414829 JAG1P78504 1218 aa17.34■□□□□ 0.37
LIMS1-206ENST00000414829 MFSD6Q6ZSS7 791 aa17.34■□□□□ 0.37
LIMS1-206ENST00000414829 CNNM2Q9H8M5 875 aa17.34■□□□□ 0.37
LIMS1-206ENST00000414829 GOPCQ9HD26 462 aa17.34■□□□□ 0.37
LIMS1-206ENST00000414829 TOMM22Q9NS69 142 aa17.34■□□□□ 0.37
LIMS1-206ENST00000414829 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.34■□□□□ 0.37
LIMS1-206ENST00000414829 GPR25O00155 361 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 FKTNO75072 461 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 TBC1D8O95759 1140 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 FGRP09769 529 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 HOXA7P31268 230 aaPredicted RBP17.33■□□□□ 0.36
LIMS1-206ENST00000414829 GUCY1A2P33402 732 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 SHROOM1Q2M3G4 852 aaPredicted RBP17.33■□□□□ 0.36
LIMS1-206ENST00000414829 AKNAD1Q5T1N1 836 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 GPAT2Q6NUI2 795 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 STK11IPQ8N1F8 1099 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 NEDD1Q8NHV4 660 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 ESR2Q92731 530 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 ESYT1Q9BSJ8 1104 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 NYAP2Q9P242 653 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 TMX2Q9Y320 296 aa17.33■□□□□ 0.36
LIMS1-206ENST00000414829 BAZ2AQ9UIF9 1905 aaKnown RBP17.33■□□□□ 0.36
LIMS1-206ENST00000414829 EIF5BO60841 1220 aaKnown RBP17.32■□□□□ 0.36
LIMS1-206ENST00000414829 PRDM1O75626 825 aa17.32■□□□□ 0.36
LIMS1-206ENST00000414829 TTLL1O95922 423 aa17.32■□□□□ 0.36
LIMS1-206ENST00000414829 GCLCP48506 637 aaPredicted RBP17.32■□□□□ 0.36
LIMS1-206ENST00000414829 CTDSPL2Q05D32 466 aa17.32■□□□□ 0.36
LIMS1-206ENST00000414829 CCDC178Q5BJE1 867 aa17.32■□□□□ 0.36
LIMS1-206ENST00000414829 ERO1AQ96HE7 468 aa17.32■□□□□ 0.36
LIMS1-206ENST00000414829 TSKSQ9UJT2 592 aa17.32■□□□□ 0.36
LIMS1-206ENST00000414829 SMIM22K7EJ46 135 aa17.31■□□□□ 0.36
LIMS1-206ENST00000414829 RANBP6O60518 1105 aaKnown RBP17.31■□□□□ 0.36
LIMS1-206ENST00000414829 HAND2P61296 217 aa17.31■□□□□ 0.36
LIMS1-206ENST00000414829 TFAP4Q01664 338 aa17.31■□□□□ 0.36
LIMS1-206ENST00000414829 ATP2B2Q01814 1243 aa17.31■□□□□ 0.36
LIMS1-206ENST00000414829 TRDNQ13061 729 aa17.31■□□□□ 0.36
LIMS1-206ENST00000414829 KIF22Q14807 665 aa17.31■□□□□ 0.36
LIMS1-206ENST00000414829 KRT23Q9C075 422 aa17.31■□□□□ 0.36
LIMS1-206ENST00000414829 VCPKMTQ9H867 229 aa17.31■□□□□ 0.36
LIMS1-206ENST00000414829 ATAD5Q96QE3 1844 aa17.31■□□□□ 0.36
LIMS1-206ENST00000414829 USP17L15C9J2P7 530 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 USP17L13C9JLJ4 530 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 USP17L11C9JVI0 530 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 USP17L18D6R9N7 530 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 USP17L22D6RA61 530 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 USP17L17D6RBQ6 530 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 USP17L19D6RCP7 530 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 USP17L20D6RJB6 530 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 EEF2P13639 858 aaKnown RBP17.3■□□□□ 0.36
LIMS1-206ENST00000414829 VCAM1P19320 739 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 SP3Q02447 781 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 USP17L24Q0WX57 530 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 ZYXQ15942 572 aaKnown RBP17.3■□□□□ 0.36
LIMS1-206ENST00000414829 TREML2Q5T2D2 321 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 SKAP1Q86WV1 359 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 IQCA1Q86XH1 822 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 ACER1Q8TDN7 264 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 ZNF296Q8WUU4 475 aaPredicted RBP17.3■□□□□ 0.36
LIMS1-206ENST00000414829 ANO2Q9NQ90 1003 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 EMILIN3Q9NT22 766 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 MTMR4Q9NYA4 1195 aa17.3■□□□□ 0.36
LIMS1-206ENST00000414829 IGKV6D-41A0A0C4DH26 115 aa17.29■□□□□ 0.36
LIMS1-206ENST00000414829 WDR46O15213 610 aaKnown RBP17.29■□□□□ 0.36
LIMS1-206ENST00000414829 REC8O95072 547 aa17.29■□□□□ 0.36
LIMS1-206ENST00000414829 RRP12Q5JTH9 1297 aaKnown RBP17.29■□□□□ 0.36
LIMS1-206ENST00000414829 RNF20Q5VTR2 975 aa17.29■□□□□ 0.36
LIMS1-206ENST00000414829 TBC1D10CQ8IV04 446 aa17.29■□□□□ 0.36
LIMS1-206ENST00000414829 MAP4K1Q92918 833 aa17.29■□□□□ 0.36
LIMS1-206ENST00000414829 CEP95Q96GE4 821 aa17.29■□□□□ 0.36
LIMS1-206ENST00000414829 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.29■□□□□ 0.36
LIMS1-206ENST00000414829 ASCC2Q9H1I8 757 aaPredicted RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 266 ms