RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 STK11IPQ8N1F8 1099 aa25.86■■□□□ 1.73
CLN3-207ENST00000395653 ZNF296Q8WUU4 475 aaPredicted RBP25.86■■□□□ 1.73
CLN3-207ENST00000395653 ANAPC4Q9UJX5 808 aa25.86■■□□□ 1.73
CLN3-207ENST00000395653 RASA1P20936 1047 aa25.85■■□□□ 1.73
CLN3-207ENST00000395653 PDE4BQ07343 736 aa25.85■■□□□ 1.73
CLN3-207ENST00000395653 BMP2KLQ5H9B9 411 aa25.85■■□□□ 1.73
CLN3-207ENST00000395653 RUFY2Q8WXA3 655 aa25.85■■□□□ 1.73
CLN3-207ENST00000395653 PARK7Q99497 189 aaKnown RBP25.85■■□□□ 1.73
CLN3-207ENST00000395653 TMOD4Q9NZQ9 345 aa25.85■■□□□ 1.73
CLN3-207ENST00000395653 TLR2O60603 784 aa25.84■■□□□ 1.73
CLN3-207ENST00000395653 TREML2Q5T2D2 321 aa25.84■■□□□ 1.73
CLN3-207ENST00000395653 FEZ1Q99689 392 aa25.84■■□□□ 1.73
CLN3-207ENST00000395653 KIAA1683Q9H0B3 1180 aa25.84■■□□□ 1.73
CLN3-207ENST00000395653 FKTNO75072 461 aa25.83■■□□□ 1.73
CLN3-207ENST00000395653 USP14P54578 494 aa25.83■■□□□ 1.73
CLN3-207ENST00000395653 PABPC4Q13310 644 aaKnown RBP eCLIP25.83■■□□□ 1.733e-6■■■■□ 26.6
CLN3-207ENST00000395653 DGKZQ13574 1117 aa25.83■■□□□ 1.73
CLN3-207ENST00000395653 USP17L2Q6R6M4 530 aa25.83■■□□□ 1.73
CLN3-207ENST00000395653 ACER1Q8TDN7 264 aa25.83■■□□□ 1.73
CLN3-207ENST00000395653 C12orf42Q96LP6 360 aa25.83■■□□□ 1.73
CLN3-207ENST00000395653 CASP8AP2Q9UKL3 1982 aa25.83■■□□□ 1.73
CLN3-207ENST00000395653 ICA1Q05084 483 aa25.82■■□□□ 1.72
CLN3-207ENST00000395653 DSCC1Q9BVC3 393 aa25.82■■□□□ 1.72
CLN3-207ENST00000395653 IL25Q9H293 177 aa25.82■■□□□ 1.72
CLN3-207ENST00000395653 PNMA3Q9UL41 463 aa25.82■■□□□ 1.72
CLN3-207ENST00000395653 ADGRA2Q96PE1 1338 aa25.82■■□□□ 1.72
CLN3-207ENST00000395653 GREB1LQ9C091 1923 aaPredicted RBP25.82■■□□□ 1.72
CLN3-207ENST00000395653 PRDM1O75626 825 aa25.81■■□□□ 1.72
CLN3-207ENST00000395653 ZNF444Q8N0Y2 327 aaPredicted RBP25.81■■□□□ 1.72
CLN3-207ENST00000395653 KANSL2Q9H9L4 492 aa25.81■■□□□ 1.72
CLN3-207ENST00000395653 EMILIN3Q9NT22 766 aa25.81■■□□□ 1.72
CLN3-207ENST00000395653 CYP2C8P10632 490 aa25.8■■□□□ 1.72
CLN3-207ENST00000395653 CTDSPL2Q05D32 466 aa25.8■■□□□ 1.72
CLN3-207ENST00000395653 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.8■■□□□ 1.72
CLN3-207ENST00000395653 SH2D4AQ9H788 454 aa25.8■■□□□ 1.72
CLN3-207ENST00000395653 ARHGEF10LQ9HCE6 1279 aa25.8■■□□□ 1.72
CLN3-207ENST00000395653 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.8■■□□□ 1.72
CLN3-207ENST00000395653 A0A1W2PRG0 241 aa25.8■■□□□ 1.72
CLN3-207ENST00000395653 HOXA7P31268 230 aaPredicted RBP25.8■■□□□ 1.72
CLN3-207ENST00000395653 SP3Q02447 781 aa25.8■■□□□ 1.72
CLN3-207ENST00000395653 C17orf99Q6UX52 265 aa25.8■■□□□ 1.72
CLN3-207ENST00000395653 CLEC10AQ8IUN9 316 aa25.8■■□□□ 1.72
CLN3-207ENST00000395653 FGRP09769 529 aa25.79■■□□□ 1.72
CLN3-207ENST00000395653 ZYXQ15942 572 aaKnown RBP25.79■■□□□ 1.72
CLN3-207ENST00000395653 SIAH1Q8IUQ4 282 aa25.79■■□□□ 1.72
CLN3-207ENST00000395653 TMX2Q9Y320 296 aa25.79■■□□□ 1.72
CLN3-207ENST00000395653 PLIN4Q96Q06 1357 aa25.79■■□□□ 1.72
CLN3-207ENST00000395653 SGSM2O43147 1006 aa25.78■■□□□ 1.72
CLN3-207ENST00000395653 OSBPP22059 807 aa25.78■■□□□ 1.72
CLN3-207ENST00000395653 ORC4O43929 436 aa25.77■■□□□ 1.72
CLN3-207ENST00000395653 EEF2P13639 858 aaKnown RBP25.77■■□□□ 1.72
CLN3-207ENST00000395653 NEDD1Q8NHV4 660 aa25.77■■□□□ 1.72
CLN3-207ENST00000395653 SMCR8Q8TEV9 937 aaPredicted RBP25.77■■□□□ 1.72
CLN3-207ENST00000395653 ERO1AQ96HE7 468 aa25.77■■□□□ 1.72
CLN3-207ENST00000395653 ASCC2Q9H1I8 757 aaPredicted RBP25.77■■□□□ 1.72
CLN3-207ENST00000395653 IGKV6D-41A0A0C4DH26 115 aa25.76■■□□□ 1.71
CLN3-207ENST00000395653 TSPY3P0CV98 308 aa25.76■■□□□ 1.71
CLN3-207ENST00000395653 TSPY8P0CW00 308 aa25.76■■□□□ 1.71
CLN3-207ENST00000395653 PCP11498 1178 aaKnown RBP25.76■■□□□ 1.71
CLN3-207ENST00000395653 VCAM1P19320 739 aa25.76■■□□□ 1.71
CLN3-207ENST00000395653 HAND2P61296 217 aa25.76■■□□□ 1.71
CLN3-207ENST00000395653 CPA4Q9UI42 421 aa25.76■■□□□ 1.71
CLN3-207ENST00000395653 CTNNA3Q9UI47 895 aa25.76■■□□□ 1.71
CLN3-207ENST00000395653 TACC3Q9Y6A5 838 aa25.76■■□□□ 1.71
CLN3-207ENST00000395653 LAMA4Q16363 1823 aa25.75■■□□□ 1.71
CLN3-207ENST00000395653 BCRP11274 1271 aa25.75■■□□□ 1.71
CLN3-207ENST00000395653 IRX3P78415 501 aaPredicted RBP25.75■■□□□ 1.71
CLN3-207ENST00000395653 TFAP4Q01664 338 aa25.75■■□□□ 1.71
CLN3-207ENST00000395653 CTU1Q7Z7A3 348 aaKnown RBP25.75■■□□□ 1.71
CLN3-207ENST00000395653 NYAP2Q9P242 653 aa25.75■■□□□ 1.71
CLN3-207ENST00000395653 ZNF213O14771 459 aa25.74■■□□□ 1.71
CLN3-207ENST00000395653 STAG1Q8WVM7 1258 aa25.74■■□□□ 1.71
CLN3-207ENST00000395653 LPAR1Q92633 364 aa25.74■■□□□ 1.71
CLN3-207ENST00000395653 NBPF3Q9H094 633 aa25.74■■□□□ 1.71
CLN3-207ENST00000395653 RNF41Q9H4P4 317 aaPredicted RBP25.74■■□□□ 1.71
CLN3-207ENST00000395653 VCPKMTQ9H867 229 aa25.74■■□□□ 1.71
CLN3-207ENST00000395653 INCENPQ9NQS7 918 aa25.74■■□□□ 1.71
CLN3-207ENST00000395653 USP17L15C9J2P7 530 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 USP17L13C9JLJ4 530 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 USP17L11C9JVI0 530 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 USP17L18D6R9N7 530 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 USP17L22D6RA61 530 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 USP17L17D6RBQ6 530 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 USP17L19D6RCP7 530 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 USP17L20D6RJB6 530 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 GCLCP48506 637 aaPredicted RBP25.73■■□□□ 1.71
CLN3-207ENST00000395653 ATP2B2Q01814 1243 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 USP17L24Q0WX57 530 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 IMMTQ16891 758 aaKnown RBP25.73■■□□□ 1.71
CLN3-207ENST00000395653 FAM47AQ5JRC9 791 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 AKNAD1Q5T1N1 836 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 TNS4Q8IZW8 715 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 CEP95Q96GE4 821 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 MTMR4Q9NYA4 1195 aa25.73■■□□□ 1.71
CLN3-207ENST00000395653 TSPY2A6NKD2 308 aa25.72■■□□□ 1.71
CLN3-207ENST00000395653 MFSD6Q6ZSS7 791 aa25.72■■□□□ 1.71
CLN3-207ENST00000395653 TBC1D10CQ8IV04 446 aa25.72■■□□□ 1.71
CLN3-207ENST00000395653 CD99L2Q8TCZ2 262 aa25.72■■□□□ 1.71
CLN3-207ENST00000395653 RANBP6O60518 1105 aaKnown RBP25.71■■□□□ 1.71
CLN3-207ENST00000395653 NT5C2P49902 561 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms