RNA–Protein interactions for RNA: ENST00000395354.1

LMNB1-202, Transcript of lamin B1, humanhuman

TSL 1 (best) BASIC

Gene LMNB1, Length 1,572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-202ENST00000395354 NID2Q14112 1375 aa22.5■■□□□ 1.19
LMNB1-202ENST00000395354 ERICH2A1L162 156 aa22.5■■□□□ 1.19
LMNB1-202ENST00000395354 SUPT20HL1Q3ZLR7 823 aa22.5■■□□□ 1.19
LMNB1-202ENST00000395354 ORC4O43929 436 aa22.49■■□□□ 1.19
LMNB1-202ENST00000395354 MBD3O95983 291 aa22.49■■□□□ 1.19
LMNB1-202ENST00000395354 STK11IPQ8N1F8 1099 aa22.49■■□□□ 1.19
LMNB1-202ENST00000395354 DDX11Q96FC9 970 aa22.49■■□□□ 1.19
LMNB1-202ENST00000395354 TOMM22Q9NS69 142 aa22.49■■□□□ 1.19
LMNB1-202ENST00000395354 SERPINB13Q9UIV8 391 aa22.49■■□□□ 1.19
LMNB1-202ENST00000395354 LAMB1P07942 1786 aa22.49■■□□□ 1.19
LMNB1-202ENST00000395354 DDX60LQ5H9U9 1706 aaKnown RBP22.49■■□□□ 1.19
LMNB1-202ENST00000395354 CPLX1O14810 134 aa22.48■■□□□ 1.19
LMNB1-202ENST00000395354 CDKL5O76039 1030 aa22.48■■□□□ 1.19
LMNB1-202ENST00000395354 RRP12Q5JTH9 1297 aaKnown RBP22.48■■□□□ 1.19
LMNB1-202ENST00000395354 NFXL1Q6ZNB6 911 aa22.48■■□□□ 1.19
LMNB1-202ENST00000395354 CRACR2BQ8N4Y2 399 aaPredicted RBP22.48■■□□□ 1.19
LMNB1-202ENST00000395354 HOOK2Q96ED9 719 aa22.48■■□□□ 1.19
LMNB1-202ENST00000395354 CDCA5Q96FF9 252 aa22.48■■□□□ 1.19
LMNB1-202ENST00000395354 DYNLL2Q96FJ2 89 aa22.48■■□□□ 1.19
LMNB1-202ENST00000395354 EHD4Q9H223 541 aa22.48■■□□□ 1.19
LMNB1-202ENST00000395354 ZSCAN16Q9H4T2 348 aaPredicted RBP22.48■■□□□ 1.19
LMNB1-202ENST00000395354 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.48■■□□□ 1.19
LMNB1-202ENST00000395354 CCDC69A6NI79 296 aa22.47■■□□□ 1.19
LMNB1-202ENST00000395354 H3BQV1 296 aa22.47■■□□□ 1.19
LMNB1-202ENST00000395354 ZBTB43O43298 467 aa22.47■■□□□ 1.19
LMNB1-202ENST00000395354 METAP2P50579 478 aaKnown RBP eCLIP22.47■■□□□ 1.19
LMNB1-202ENST00000395354 WTAPQ15007 396 aa22.47■■□□□ 1.19
LMNB1-202ENST00000395354 IFFO2Q5TF58 517 aa22.47■■□□□ 1.19
LMNB1-202ENST00000395354 CPLX2Q6PUV4 134 aaKnown RBP22.47■■□□□ 1.19
LMNB1-202ENST00000395354 SYNE3Q6ZMZ3 975 aa22.47■■□□□ 1.19
LMNB1-202ENST00000395354 MIGA2Q7L4E1 593 aa22.47■■□□□ 1.19
LMNB1-202ENST00000395354 TRIM34Q9BYJ4 488 aa22.47■■□□□ 1.19
LMNB1-202ENST00000395354 SLC12A7Q9Y666 1083 aa22.47■■□□□ 1.19
LMNB1-202ENST00000395354 TRAF5O00463 557 aa22.46■■□□□ 1.19
LMNB1-202ENST00000395354 DTNBO60941 627 aa22.46■■□□□ 1.19
LMNB1-202ENST00000395354 TOMM70O94826 608 aa22.46■■□□□ 1.19
LMNB1-202ENST00000395354 ITGBL1O95965 494 aaPredicted RBP22.46■■□□□ 1.19
LMNB1-202ENST00000395354 SLURP2P0DP57 97 aa22.46■■□□□ 1.19
LMNB1-202ENST00000395354 METTL16Q86W50 562 aaKnown RBP22.46■■□□□ 1.19
LMNB1-202ENST00000395354 CHAMP1Q96JM3 812 aa22.46■■□□□ 1.19
LMNB1-202ENST00000395354 UBAC1Q9BSL1 405 aa22.46■■□□□ 1.19
LMNB1-202ENST00000395354 HERC5Q9UII4 1024 aaKnown RBP22.46■■□□□ 1.19
LMNB1-202ENST00000395354 TBC1D12O60347 775 aa22.46■■□□□ 1.19
LMNB1-202ENST00000395354 NCLP19338 710 aaKnown RBP22.46■■□□□ 1.19
LMNB1-202ENST00000395354 GABPAQ06546 454 aa22.46■■□□□ 1.19
LMNB1-202ENST00000395354 SMC1BQ8NDV3 1235 aa22.46■■□□□ 1.19
LMNB1-202ENST00000395354 FAM196BA6NMK8 535 aa22.45■■□□□ 1.18
LMNB1-202ENST00000395354 FDPSP14324 419 aaKnown RBP22.45■■□□□ 1.18
LMNB1-202ENST00000395354 NF2P35240 595 aa22.45■■□□□ 1.18
LMNB1-202ENST00000395354 CDK8P49336 464 aa22.45■■□□□ 1.18
LMNB1-202ENST00000395354 MAP3K10Q02779 954 aa22.45■■□□□ 1.18
LMNB1-202ENST00000395354 PDE4BQ07343 736 aa22.45■■□□□ 1.18
LMNB1-202ENST00000395354 C16orf86Q6ZW13 317 aa22.45■■□□□ 1.18
LMNB1-202ENST00000395354 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.45■■□□□ 1.18
LMNB1-202ENST00000395354 ROBO3Q96MS0 1386 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 FMR1Q06787 632 aaKnown RBP eCLIP22.44■■□□□ 1.187e-6■■□□□ 12.8
LMNB1-202ENST00000395354 PPP2R5BQ15173 497 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 SEC23AQ15436 765 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 DCAF15Q66K64 600 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 IQCA1Q86XH1 822 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 SLC44A5Q8NCS7 719 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 RBM46Q8TBY0 533 aaKnown RBP22.44■■□□□ 1.18
LMNB1-202ENST00000395354 GZF1Q9H116 711 aaPredicted RBP22.44■■□□□ 1.18
LMNB1-202ENST00000395354 ZNF287Q9HBT7 754 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 SWAP70Q9UH65 585 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 TAOK2Q9UL54 1235 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 ISY1Q9ULR0 285 aaKnown RBP22.44■■□□□ 1.18
LMNB1-202ENST00000395354 CNPY2Q9Y2B0 182 aa22.44■■□□□ 1.18
LMNB1-202ENST00000395354 GOLGA8AA7E2F4 631 aa22.43■■□□□ 1.18
LMNB1-202ENST00000395354 KRT85P78386 507 aa22.43■■□□□ 1.18
LMNB1-202ENST00000395354 DNM1Q05193 864 aaKnown RBP22.43■■□□□ 1.18
LMNB1-202ENST00000395354 RESTQ13127 1097 aa22.43■■□□□ 1.18
LMNB1-202ENST00000395354 ZSCAN10Q96SZ4 725 aaPredicted RBP22.43■■□□□ 1.18
LMNB1-202ENST00000395354 DNAJC18Q9H819 358 aa22.43■■□□□ 1.18
LMNB1-202ENST00000395354 MKNK2Q9HBH9 465 aa22.43■■□□□ 1.18
LMNB1-202ENST00000395354 SENP2Q9HC62 589 aa22.43■■□□□ 1.18
LMNB1-202ENST00000395354 ORC3Q9UBD5 711 aaPredicted RBP22.43■■□□□ 1.18
LMNB1-202ENST00000395354 SIPA1L1O43166 1804 aa22.42■■□□□ 1.18
LMNB1-202ENST00000395354 FOXD4L6Q3SYB3 417 aaPredicted RBP22.42■■□□□ 1.18
LMNB1-202ENST00000395354 FOXD4L3Q6VB84 417 aaPredicted RBP22.42■■□□□ 1.18
LMNB1-202ENST00000395354 GPT2Q8TD30 523 aa22.42■■□□□ 1.18
LMNB1-202ENST00000395354 CCDC196A0A1B0GTZ2 297 aa22.42■■□□□ 1.18
LMNB1-202ENST00000395354 PPP1R12BO60237 982 aaPredicted RBP22.42■■□□□ 1.18
LMNB1-202ENST00000395354 PRDM1O75626 825 aa22.42■■□□□ 1.18
LMNB1-202ENST00000395354 SHMT1P34896 483 aa22.42■■□□□ 1.18
LMNB1-202ENST00000395354 PRKG1Q13976 671 aa22.42■■□□□ 1.18
LMNB1-202ENST00000395354 MICU3Q86XE3 530 aa22.42■■□□□ 1.18
LMNB1-202ENST00000395354 ZNF341Q9BYN7 854 aa22.42■■□□□ 1.18
LMNB1-202ENST00000395354 ZNF408Q9H9D4 720 aa22.42■■□□□ 1.18
LMNB1-202ENST00000395354 TNKSO95271 1327 aa22.41■■□□□ 1.18
LMNB1-202ENST00000395354 RANBP6O60518 1105 aaKnown RBP22.41■■□□□ 1.18
LMNB1-202ENST00000395354 ATL3Q6DD88 541 aa22.41■■□□□ 1.18
LMNB1-202ENST00000395354 TATDN1Q6P1N9 297 aa22.41■■□□□ 1.18
LMNB1-202ENST00000395354 FERMT3Q86UX7 667 aa22.41■■□□□ 1.18
LMNB1-202ENST00000395354 FAM217BQ9NTX9 383 aaPredicted RBP22.41■■□□□ 1.18
LMNB1-202ENST00000395354 FZD1Q9UP38 647 aa22.41■■□□□ 1.18
LMNB1-202ENST00000395354 SSC5DA1L4H1 1573 aa22.41■■□□□ 1.18
LMNB1-202ENST00000395354 ELP1O95163 1332 aa22.4■■□□□ 1.18
LMNB1-202ENST00000395354 STK36Q9NRP7 1315 aa22.4■■□□□ 1.18
LMNB1-202ENST00000395354 USP2O75604 605 aaPredicted RBP22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms