RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 FAM76AQ8TAV0 307 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 MRPS27Q92552 414 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 NKIRAS1Q9NYS0 192 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 SAMD15Q9P1V8 674 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 GOLGA8QA0A0J9YX86 632 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 GOLGA8OA6NCC3 632 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 GOLGA8NF8WBI6 632 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 TSPY3P0CV98 308 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 TSPY8P0CW00 308 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 ECE1P42892 770 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 PAPOLAP51003 745 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 CAPRIN1Q14444 709 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 PTPN14Q15678 1187 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 GPR161Q8N6U8 529 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 FLCNQ8NFG4 579 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 ZSCAN18Q8TBC5 510 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 RSRC1Q96IZ7 334 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 TRIM47Q96LD4 638 aa5.12□□□□□ -1.59
SCN1A-202ENST00000375405 LARP6Q9BRS8 491 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 UTP6Q9NYH9 597 aaKnown RBP5.12□□□□□ -1.59
SCN1A-202ENST00000375405 TNNC2P02585 160 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 TBL3Q12788 808 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 HERC4Q5GLZ8 1057 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 CWC27Q6UX04 472 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 TRMT10CQ7L0Y3 403 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 TBC1D32Q96NH3 1257 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 API5Q9BZZ5 524 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 REXO4Q9GZR2 422 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 SCAND2PQ9GZW5 306 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 CLUP10909 449 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 PEX5P50542 639 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 GLE1Q53GS7 698 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 IRAK1BP1Q5VVH5 260 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 NCAPG2Q86XI2 1143 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 PALB2Q86YC2 1186 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 RPAP3Q9H6T3 665 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 PALMDQ9NP74 551 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 NOB1Q9ULX3 412 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 U3KPZ7 1027 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 AK9Q5TCS8 1911 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 ARHGAP42A6NI28 874 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 AKR1B10O60218 316 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 BCAR3O75815 825 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 KLHL18O94889 574 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 BAG2O95816 211 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 MCM2P49736 904 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 LETM2Q2VYF4 491 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 HEATR3Q7Z4Q2 680 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 GAS2L3Q86XJ1 694 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 CDAN1Q8IWY9 1227 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 TTC13Q8NBP0 860 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 MYLK2Q9H1R3 596 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 ZMYND8Q9ULU4 1186 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 FIS1Q9Y3D6 152 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 ARF5P84085 180 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 BLOC1S2Q6QNY1 142 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 RAPH1Q70E73 1250 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 SCG3Q8WXD2 468 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 CPSF3Q9UKF6 684 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 CCPG1Q9ULG6 757 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 SPG7Q9UQ90 795 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 CDC40O60508 579 aaKnown RBP eCLIP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 CSE1LP55060 971 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 POLA2Q14181 598 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 PDZD4Q76G19 769 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 BCAP29Q9UHQ4 241 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 TRIM64A6NGJ6 449 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 GOLGA8RI6L899 631 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 DPYSL4O14531 572 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 SORBS3O60504 671 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 TSPAN9O75954 239 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 TTC4O95801 387 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 PCYT1AP49585 367 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 YARSP54577 528 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 PDE3AQ14432 1141 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 ABTB1Q969K4 478 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 SLC4A9Q96Q91 983 aa5.11□□□□□ -1.59
SCN1A-202ENST00000375405 PHAXQ9H814 394 aaKnown RBP5.11□□□□□ -1.59
SCN1A-202ENST00000375405 IFIT3O14879 490 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PEX1O43933 1283 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 MTRF1O75570 445 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 KRT8P05787 483 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 HDAC4P56524 1084 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 RAB3GAP1Q15042 981 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PARP10Q53GL7 1025 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ENOX1Q8TC92 643 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PPWD1Q96BP3 646 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 USP47Q96K76 1375 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 KIF1CO43896 1103 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 TSPY1Q01534 308 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PDE4BQ07343 736 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 DYNC1I2Q13409 638 aaKnown RBP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 YAF2Q8IY57 180 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 FBXL13Q8NEE6 735 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 FTOQ9C0B1 505 aaKnown RBP eCLIP5.1□□□□□ -1.59
SCN1A-202ENST00000375405 ST7Q9NRC1 585 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 INTS13Q9NVM9 706 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 CTTNBP2NLQ9P2B4 639 aa5.1□□□□□ -1.59
SCN1A-202ENST00000375405 PCDHGA4Q9Y5G9 962 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms