RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 VPS16Q9H269 839 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 BLZF1Q9H2G9 400 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 ESF1Q9H501 851 aaKnown RBP6.17□□□□□ -1.42
ATG4A-204ENST00000372246 ZBTB3Q9H5J0 574 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 C19orf44Q9H6X5 657 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 EHD2Q9NZN4 543 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 SEPT9Q9UHD8 586 aaPredicted RBP6.17□□□□□ -1.42
ATG4A-204ENST00000372246 PCDHB6Q9Y5E3 794 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 TACC3Q9Y6A5 838 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 SPATA31D1Q6ZQQ2 1576 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 ADAMTS13Q76LX8 1427 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 A0A1B0GUL7 405 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 IKBKBO14920 756 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 YEATS4O95619 227 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 SYF2O95926 243 aaKnown RBP6.17□□□□□ -1.42
ATG4A-204ENST00000372246 ZAP70P43403 619 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 CCT5P48643 541 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 TOB1P50616 345 aaPredicted RBP6.17□□□□□ -1.42
ATG4A-204ENST00000372246 MDM2Q00987 491 aaPredicted RBP6.17□□□□□ -1.42
ATG4A-204ENST00000372246 PPARAQ07869 468 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 EARS2Q5JPH6 523 aaKnown RBP6.17□□□□□ -1.42
ATG4A-204ENST00000372246 FAM43BQ6ZT52 329 aaPredicted RBP6.17□□□□□ -1.42
ATG4A-204ENST00000372246 TTLL7Q6ZT98 887 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 LAPTM4BQ86VI4 370 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 IGSF22Q8N9C0 903 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 CERKQ8TCT0 537 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 ZNF274Q96GC6 653 aaPredicted RBP6.17□□□□□ -1.42
ATG4A-204ENST00000372246 BPIFA3Q9BQP9 254 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 SLC26A6Q9BXS9 759 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 AGXT2Q9BYV1 514 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 DDX21Q9NR30 783 aaKnown RBP eCLIP6.17□□□□□ -1.42
ATG4A-204ENST00000372246 GUCA1BQ9UMX6 200 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 HDAC5Q9UQL6 1122 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 HPSEQ9Y251 543 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 DUSP10Q9Y6W6 482 aa6.17□□□□□ -1.42
ATG4A-204ENST00000372246 CCDC151A5D8V7 595 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 NKRFO15226 690 aaKnown RBP eCLIP6.16□□□□□ -1.42
ATG4A-204ENST00000372246 ZPR1O75312 459 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 PDE6BP35913 854 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 CTDSPL2Q05D32 466 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 NEXNQ0ZGT2 675 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 AKAP4Q5JQC9 854 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 RRP12Q5JTH9 1297 aaKnown RBP6.16□□□□□ -1.42
ATG4A-204ENST00000372246 SMCR8Q8TEV9 937 aaPredicted RBP6.16□□□□□ -1.42
ATG4A-204ENST00000372246 HDAC7Q8WUI4 952 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 WNT2BQ93097 391 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 RRP36Q96EU6 259 aaKnown RBP6.16□□□□□ -1.42
ATG4A-204ENST00000372246 MMS19Q96T76 1030 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 LRRC37A3O60309 1634 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 LAMA4Q16363 1823 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 PES1O00541 588 aaKnown RBP6.16□□□□□ -1.42
ATG4A-204ENST00000372246 ADAMTS3O15072 1205 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 RNF113AO15541 343 aaKnown RBP6.16□□□□□ -1.42
ATG4A-204ENST00000372246 PRDM1O75626 825 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 GYPCP04921 128 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 MATR3P43243 847 aaKnown RBP eCLIP6.16□□□□□ -1.42
ATG4A-204ENST00000372246 ATP2B2Q01814 1243 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 POSTNQ15063 836 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 TTC39AQ5SRH9 613 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 CCDC102BQ68D86 513 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 MB21D2Q8IYB1 491 aaPredicted RBP6.16□□□□□ -1.42
ATG4A-204ENST00000372246 DDX17Q92841 729 aaKnown RBP6.16□□□□□ -1.42
ATG4A-204ENST00000372246 COPRSQ9NQ92 184 aa6.16□□□□□ -1.42
ATG4A-204ENST00000372246 PIK3C2AO00443 1686 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 FMN2Q9NZ56 1722 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 AKR1B15C9JRZ8 316 aaPredicted RBP6.15□□□□□ -1.42
ATG4A-204ENST00000372246 STX10O60499 249 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 ATP1A1P05023 1023 aaKnown RBP6.15□□□□□ -1.42
ATG4A-204ENST00000372246 CCDC175P0C221 793 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 ZNF18P17022 549 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 GGCXP38435 758 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 METAP2P50579 478 aaKnown RBP eCLIP6.15□□□□□ -1.42
ATG4A-204ENST00000372246 FOXO4P98177 505 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 SLC7A5Q01650 507 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 RESP18Q5W5W9 173 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 ZNF790Q6PG37 636 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 NFXL1Q6ZNB6 911 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 APTXQ7Z2E3 356 aaKnown RBP6.15□□□□□ -1.42
ATG4A-204ENST00000372246 HDXQ7Z353 690 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 CEP120Q8N960 986 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 TTC13Q8NBP0 860 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 SHISA4Q96DD7 197 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 ZFRQ96KR1 1074 aaKnown RBP6.15□□□□□ -1.42
ATG4A-204ENST00000372246 METTL22Q9BUU2 404 aaPredicted RBP6.15□□□□□ -1.42
ATG4A-204ENST00000372246 CSRNP2Q9H175 543 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 KAT14Q9H8E8 782 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 TAB2Q9NYJ8 693 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 CDC23Q9UJX2 597 aa6.15□□□□□ -1.42
ATG4A-204ENST00000372246 UTYO14607 1347 aa6.15□□□□□ -1.43
ATG4A-204ENST00000372246 UBN2Q6ZU65 1347 aa6.15□□□□□ -1.43
ATG4A-204ENST00000372246 SH3TC1Q8TE82 1336 aa6.15□□□□□ -1.43
ATG4A-204ENST00000372246 CHD2O14647 1828 aaKnown RBP6.15□□□□□ -1.43
ATG4A-204ENST00000372246 RCCD1A6NED2 376 aa6.15□□□□□ -1.43
ATG4A-204ENST00000372246 PDE2AO00408 941 aaPredicted RBP6.15□□□□□ -1.43
ATG4A-204ENST00000372246 EXOC5O00471 708 aa6.15□□□□□ -1.43
ATG4A-204ENST00000372246 CBFA2T2O43439 604 aa6.15□□□□□ -1.43
ATG4A-204ENST00000372246 DDX58O95786 925 aaKnown RBP6.15□□□□□ -1.43
ATG4A-204ENST00000372246 KCNJ6P48051 423 aa6.15□□□□□ -1.43
ATG4A-204ENST00000372246 KLK7P49862 253 aa6.15□□□□□ -1.43
ATG4A-204ENST00000372246 DNA2P51530 1060 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms