RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 RTCBQ9Y3I0 505 aaKnown RBP4.5□□□□□ -1.69
MCF2-202ENST00000370573 KCPQ6ZWJ8 1503 aa4.5□□□□□ -1.69
MCF2-202ENST00000370573 ADARB2-AS1A8MUL3 147 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 ANXA1P04083 346 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 SNRPA1P09661 255 aaKnown RBP4.49□□□□□ -1.69
MCF2-202ENST00000370573 TRIM27P14373 513 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 ARSDP51689 593 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 MLLT1Q03111 559 aaPredicted RBP4.49□□□□□ -1.69
MCF2-202ENST00000370573 CCDC30Q5VVM6 783 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 ZKSCAN2Q63HK3 967 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 C16orf46Q6P387 395 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 TTC5Q8N0Z6 440 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.49□□□□□ -1.69
MCF2-202ENST00000370573 FMNL2Q96PY5 1086 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 MDFIQ99750 246 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 DOT1LQ8TEK3 1739 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 PAPPAQ13219 1627 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 BRWD3Q6RI45 1802 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 FAM229AH3BQW9 127 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 EIF5BO60841 1220 aaKnown RBP4.49□□□□□ -1.69
MCF2-202ENST00000370573 EPB42P16452 691 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 RXRBP28702 533 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 PDE3AQ14432 1141 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 SF3A1Q15459 793 aaKnown RBP4.49□□□□□ -1.69
MCF2-202ENST00000370573 ATF7IPQ6VMQ6 1270 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 TMC7Q7Z402 723 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 DNAJC2Q99543 621 aaKnown RBP4.49□□□□□ -1.69
MCF2-202ENST00000370573 PHAXQ9H814 394 aaKnown RBP4.49□□□□□ -1.69
MCF2-202ENST00000370573 DNAJB12Q9NXW2 375 aaKnown RBP4.49□□□□□ -1.69
MCF2-202ENST00000370573 CHPF2Q9P2E5 772 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 C5P01031 1676 aa4.49□□□□□ -1.69
MCF2-202ENST00000370573 UBR2Q8IWV8 1755 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 CANXP27824 592 aaKnown RBP4.48□□□□□ -1.69
MCF2-202ENST00000370573 HFE2Q6ZVN8 426 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 KRT27Q7Z3Y8 459 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 LRP10Q7Z4F1 713 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 ZSCAN29Q8IWY8 852 aaPredicted RBP4.48□□□□□ -1.69
MCF2-202ENST00000370573 DNAJC10Q8IXB1 793 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 MICALL1Q8N3F8 863 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 ARHGAP45Q92619 1136 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 RGS12O14924 1447 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 SCAMP3O14828 347 aaKnown RBP4.48□□□□□ -1.69
MCF2-202ENST00000370573 ZBTB39O15060 712 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 IPO8O15397 1037 aaKnown RBP4.48□□□□□ -1.69
MCF2-202ENST00000370573 XYLBO75191 536 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 A1BGP04217 495 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 RARAP10276 462 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 PIP4K2AP48426 406 aaPredicted RBP4.48□□□□□ -1.69
MCF2-202ENST00000370573 COL19A1Q14993 1142 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 ERICH6BQ5W0A0 696 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 NT5DC4Q86YG4 428 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 DZIP1LQ8IYY4 767 aaKnown RBP4.48□□□□□ -1.69
MCF2-202ENST00000370573 TINF2Q9BSI4 451 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 STK31Q9BXU1 1019 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 NAGPAQ9UK23 515 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 BRPF3Q9ULD4 1205 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 SLC6A14Q9UN76 642 aa4.48□□□□□ -1.69
MCF2-202ENST00000370573 KIF16BQ96L93 1317 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 F6X3S4 739 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 CPB1P15086 417 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 BRD2P25440 801 aaKnown RBP4.47□□□□□ -1.69
MCF2-202ENST00000370573 PSAPL1Q6NUJ1 521 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 FAM35AQ86V20 835 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 TMEM57Q8N5G2 664 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 API5Q9BZZ5 524 aaKnown RBP4.47□□□□□ -1.69
MCF2-202ENST00000370573 JPH1Q9HDC5 661 aaPredicted RBP4.47□□□□□ -1.69
MCF2-202ENST00000370573 DDX21Q9NR30 783 aaKnown RBP eCLIP4.47□□□□□ -1.69
MCF2-202ENST00000370573 DBF4Q9UBU7 674 aaPredicted RBP4.47□□□□□ -1.69
MCF2-202ENST00000370573 ABCC4O15439 1325 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 ZBTB42B2RXF5 422 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 TNFRSF10BO14763 440 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 CYP19A1P11511 503 aaPredicted RBP4.47□□□□□ -1.69
MCF2-202ENST00000370573 MYL6BP14649 208 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 ITPK1Q13572 414 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 DHX38Q92620 1227 aaKnown RBP4.47□□□□□ -1.69
MCF2-202ENST00000370573 SETDB2Q96T68 719 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 SPOCK3Q9BQ16 436 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 LNPKQ9C0E8 428 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 CWC22Q9HCG8 908 aaKnown RBP4.47□□□□□ -1.69
MCF2-202ENST00000370573 SBF2Q86WG5 1849 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 CACNA1FO60840 1977 aa4.47□□□□□ -1.69
MCF2-202ENST00000370573 PTPRCP08575 1304 aa4.46□□□□□ -1.69
MCF2-202ENST00000370573 LOC102724428A0A0B4J2F2 783 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 IGHA2P01877 340 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 SIK1P57059 783 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 COL9A3Q14050 684 aaPredicted RBP4.46□□□□□ -1.7
MCF2-202ENST00000370573 MVPQ14764 893 aaKnown RBP4.46□□□□□ -1.7
MCF2-202ENST00000370573 INTS3Q68E01 1043 aaKnown RBP4.46□□□□□ -1.7
MCF2-202ENST00000370573 C20orf204Q6ZNR8 217 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 FAM196AQ6ZSG2 479 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 COPS6Q7L5N1 327 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 DHX32Q7L7V1 743 aaKnown RBP4.46□□□□□ -1.7
MCF2-202ENST00000370573 XAGE3Q8WTP9 111 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 SMARCC1Q92922 1105 aaPredicted RBP4.46□□□□□ -1.7
MCF2-202ENST00000370573 HYPKQ9NX55 129 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 PPP4R2Q9NY27 417 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 NOP53Q9NZM5 478 aaKnown RBP4.46□□□□□ -1.7
MCF2-202ENST00000370573 KCNMB2Q9Y691 235 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 EP400Q96L91 3159 aa4.46□□□□□ -1.7
MCF2-202ENST00000370573 NHSQ6T4R5 1651 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms