RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 BCL2L12Q9HB09 334 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 BCRP11274 1271 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 CDC25BP30305 580 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 PDE4DQ08499 809 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 RBM26Q5T8P6 1007 aaKnown RBP8.07□□□□□ -1.12
SYNE1-208ENST00000367256 KLHL14Q9P2G3 628 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 USTQ9Y2C2 406 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 ORC6Q9Y5N6 252 aa8.07□□□□□ -1.12
SYNE1-208ENST00000367256 CCDC13Q8IYE1 715 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 PDCD7Q8N8D1 485 aaKnown RBP8.06□□□□□ -1.12
SYNE1-208ENST00000367256 RSAD2Q8WXG1 361 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 RNF123Q5XPI4 1314 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 EFCAB13Q8IY85 973 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 PDZD8Q8NEN9 1154 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 LZTS2Q9BRK4 669 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 DEXIO95424 95 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 PHEXP78562 749 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 RPS6KA2Q15349 733 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 NELFBQ8WX92 580 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 NOC2LQ9Y3T9 749 aaKnown RBP8.06□□□□□ -1.12
SYNE1-208ENST00000367256 MAN1A1P33908 653 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 VPS16Q9H269 839 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 MRPL44Q9H9J2 332 aaKnown RBP8.06□□□□□ -1.12
SYNE1-208ENST00000367256 KRT81Q14533 505 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 LRCH2Q5VUJ6 765 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 RASEFQ8IZ41 740 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 FAF1Q9UNN5 650 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-208ENST00000367256 SAR1BQ9Y6B6 198 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 KIF1BO60333 1816 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 NOP56O00567 594 aaKnown RBP8.06□□□□□ -1.12
SYNE1-208ENST00000367256 GNA14O95837 355 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 HOXB7P09629 217 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 TFCP2Q12800 502 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 STAG1Q8WVM7 1258 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 PSMB7Q99436 277 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 CARD6Q9BX69 1037 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 WDR7Q9Y4E6 1490 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 SERPINB6P35237 376 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 BIRC2Q13490 618 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 RPS6KA1Q15418 735 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 PIK3AP1Q6ZUJ8 805 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 TRIML1Q8N9V2 468 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 POMGNT1Q8WZA1 660 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 MAP3K5Q99683 1374 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 PICK1Q9NRD5 415 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 DNMT1P26358 1616 aaKnown RBP8.06□□□□□ -1.12
SYNE1-208ENST00000367256 PEG3Q9GZU2 1588 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 TEX14Q8IWB6 1497 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 PSPC1Q8WXF1 523 aaKnown RBP8.06□□□□□ -1.12
SYNE1-208ENST00000367256 ANKRD2Q9GZV1 360 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 LMBRD1Q9NUN5 540 aa8.06□□□□□ -1.12
SYNE1-208ENST00000367256 DDX41Q9UJV9 622 aaKnown RBP8.06□□□□□ -1.12
SYNE1-208ENST00000367256 TCOF1Q13428 1488 aaKnown RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 ARHGEF35A5YM69 484 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 GUCY2FP51841 1108 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 PDCD2Q16342 344 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 MICAL1Q8TDZ2 1067 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 RUNDC3BQ96NL0 473 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 TBC1D7Q9P0N9 293 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 CAPN7Q9Y6W3 813 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 POLR2DO15514 142 aaKnown RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 P4HA1P13674 534 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 SNCBQ16143 134 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 C17orf53Q8N3J3 647 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 SEPT10Q9P0V9 454 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 PSDA5PKW4 1024 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 YWHAEP62258 255 aaKnown RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 RNASELQ05823 741 aaKnown RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 EFCC1Q9HA90 598 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 SPATS2LQ9NUQ6 558 aaKnown RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 SPECC1L-ADORA2AF8WAN1 911 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 ANXA1P04083 346 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 SLMAPQ14BN4 828 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 DNAJC8O75937 253 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 HOXA7P31268 230 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 CCDC93Q567U6 631 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 TRIM56Q9BRZ2 755 aaKnown RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 ZNF202O95125 648 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 KIF11P52732 1056 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 BAIAP2L1Q9UHR4 511 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 SAP30BPQ9UHR5 308 aaKnown RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 ANGEL1Q9UNK9 670 aaKnown RBP8.05□□□□□ -1.12
SYNE1-208ENST00000367256 TRPM2O94759 1503 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 GCNT3O95395 438 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 GSTA1P08263 222 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 GSTA2P09210 222 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 CALCRLQ16602 461 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 MUM1L1Q5H9M0 696 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 GRK7Q8WTQ7 553 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 GPCPD1Q9NPB8 672 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 PPP1R9AQ9ULJ8 1098 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 FLT4P35916 1363 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 FAM135BQ49AJ0 1406 aa8.05□□□□□ -1.12
SYNE1-208ENST00000367256 POSTNQ15063 836 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 TRIM50Q86XT4 487 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 ANKRD42Q8N9B4 389 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 ARHGEF10LQ9HCE6 1279 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 BAG5Q9UL15 447 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 TRIM35Q9UPQ4 493 aa8.04□□□□□ -1.12
SYNE1-208ENST00000367256 NOD1Q9Y239 953 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms