RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 METAP2P50579 478 aaKnown RBP eCLIP23.28■■□□□ 1.32
CLN3-205ENST00000359984 PRAMEF18Q5VWM3 479 aa23.28■■□□□ 1.32
CLN3-205ENST00000359984 STX8Q9UNK0 236 aa23.28■■□□□ 1.32
CLN3-205ENST00000359984 PPP2R3BQ9Y5P8 575 aa23.28■■□□□ 1.32
CLN3-205ENST00000359984 WDR90Q96KV7 1748 aa23.28■■□□□ 1.32
CLN3-205ENST00000359984 JAG1P78504 1218 aa23.27■■□□□ 1.32
CLN3-205ENST00000359984 ABCB5Q2M3G0 1257 aa23.27■■□□□ 1.32
CLN3-205ENST00000359984 CATIPQ7Z7H3 387 aa23.27■■□□□ 1.32
CLN3-205ENST00000359984 CCDC144CPQ8IYA2 1237 aa23.27■■□□□ 1.32
CLN3-205ENST00000359984 DCPSQ96C86 337 aaKnown RBP23.27■■□□□ 1.32
CLN3-205ENST00000359984 TMEM47Q9BQJ4 181 aa23.27■■□□□ 1.32
CLN3-205ENST00000359984 SCN4AP35499 1836 aa23.27■■□□□ 1.32
CLN3-205ENST00000359984 CLEC10AQ8IUN9 316 aa23.26■■□□□ 1.31
CLN3-205ENST00000359984 KAT14Q9H8E8 782 aa23.26■■□□□ 1.31
CLN3-205ENST00000359984 CWC22Q9HCG8 908 aaKnown RBP23.26■■□□□ 1.31
CLN3-205ENST00000359984 GOLGA8AA7E2F4 631 aa23.26■■□□□ 1.31
CLN3-205ENST00000359984 RCAN1P53805 252 aa23.26■■□□□ 1.31
CLN3-205ENST00000359984 TROAPQ12815 778 aa23.26■■□□□ 1.31
CLN3-205ENST00000359984 ZC3H15Q8WU90 426 aaKnown RBP23.26■■□□□ 1.31
CLN3-205ENST00000359984 NUP133Q8WUM0 1156 aa23.26■■□□□ 1.31
CLN3-205ENST00000359984 FAM217BQ9NTX9 383 aaPredicted RBP23.26■■□□□ 1.31
CLN3-205ENST00000359984 SMC3Q9UQE7 1217 aa23.26■■□□□ 1.31
CLN3-205ENST00000359984 CTDNEP1O95476 244 aa23.25■■□□□ 1.31
CLN3-205ENST00000359984 GH2P01242 217 aa23.25■■□□□ 1.31
CLN3-205ENST00000359984 CDC27P30260 824 aa23.25■■□□□ 1.31
CLN3-205ENST00000359984 GUCY1A2P33402 732 aa23.25■■□□□ 1.31
CLN3-205ENST00000359984 ADD1P35611 737 aaKnown RBP23.25■■□□□ 1.31
CLN3-205ENST00000359984 TMEM179Q6ZVK1 233 aa23.25■■□□□ 1.31
CLN3-205ENST00000359984 PNMA1Q8ND90 353 aa23.25■■□□□ 1.31
CLN3-205ENST00000359984 NID2Q14112 1375 aa23.25■■□□□ 1.31
CLN3-205ENST00000359984 GREB1LQ9C091 1923 aaPredicted RBP23.24■■□□□ 1.31
CLN3-205ENST00000359984 DDAH1O94760 285 aa23.24■■□□□ 1.31
CLN3-205ENST00000359984 SEPT2Q15019 361 aa23.24■■□□□ 1.31
CLN3-205ENST00000359984 EAPPQ56P03 285 aaPredicted RBP23.24■■□□□ 1.31
CLN3-205ENST00000359984 SULF1Q8IWU6 871 aa23.24■■□□□ 1.31
CLN3-205ENST00000359984 FANCBQ8NB91 859 aa23.24■■□□□ 1.31
CLN3-205ENST00000359984 NSUN7Q8NE18 718 aaKnown RBP23.24■■□□□ 1.31
CLN3-205ENST00000359984 CHMP4CQ96CF2 233 aa23.24■■□□□ 1.31
CLN3-205ENST00000359984 LLPHQ9BRT6 129 aaKnown RBP23.24■■□□□ 1.31
CLN3-205ENST00000359984 PHF20L1A8MW92 1017 aa23.24■■□□□ 1.31
CLN3-205ENST00000359984 DHX16O60231 1041 aaKnown RBP23.24■■□□□ 1.31
CLN3-205ENST00000359984 JAK2O60674 1132 aa23.24■■□□□ 1.31
CLN3-205ENST00000359984 TOP1P11387 765 aaKnown RBP23.24■■□□□ 1.31
CLN3-205ENST00000359984 POLR2AP24928 1970 aaKnown RBP23.24■■□□□ 1.31
CLN3-205ENST00000359984 PNMA8AQ86V59 439 aaPredicted RBP23.24■■□□□ 1.31
CLN3-205ENST00000359984 CABP5Q9NP86 173 aa23.24■■□□□ 1.31
CLN3-205ENST00000359984 CLIP2Q9UDT6 1046 aa23.24■■□□□ 1.31
CLN3-205ENST00000359984 ADM5C9JUS6 153 aa23.23■■□□□ 1.31
CLN3-205ENST00000359984 TTLL1O95922 423 aa23.23■■□□□ 1.31
CLN3-205ENST00000359984 CALM1P0DP23 149 aa23.23■■□□□ 1.31
CLN3-205ENST00000359984 CALM2P0DP24 149 aa23.23■■□□□ 1.31
CLN3-205ENST00000359984 CALM3P0DP25 149 aa23.23■■□□□ 1.31
CLN3-205ENST00000359984 RTN1Q16799 776 aa23.23■■□□□ 1.31
CLN3-205ENST00000359984 HOOK2Q96ED9 719 aa23.23■■□□□ 1.31
CLN3-205ENST00000359984 KANSL2Q9H9L4 492 aa23.23■■□□□ 1.31
CLN3-205ENST00000359984 GJB2P29033 226 aa23.22■■□□□ 1.31
CLN3-205ENST00000359984 CAP2P40123 477 aa23.22■■□□□ 1.31
CLN3-205ENST00000359984 DLK2Q6UY11 383 aa23.22■■□□□ 1.31
CLN3-205ENST00000359984 KRT26Q7Z3Y9 468 aa23.22■■□□□ 1.31
CLN3-205ENST00000359984 SMARCC2Q8TAQ2 1214 aa23.22■■□□□ 1.31
CLN3-205ENST00000359984 PPP4R3BQ5MIZ7 849 aa23.22■■□□□ 1.31
CLN3-205ENST00000359984 DCAF15Q66K64 600 aa23.22■■□□□ 1.31
CLN3-205ENST00000359984 SIAH1Q8IUQ4 282 aa23.22■■□□□ 1.31
CLN3-205ENST00000359984 CPLX1O14810 134 aa23.21■■□□□ 1.31
CLN3-205ENST00000359984 RAB3GAP1Q15042 981 aa23.21■■□□□ 1.31
CLN3-205ENST00000359984 SUPT20HL1Q3ZLR7 823 aa23.21■■□□□ 1.31
CLN3-205ENST00000359984 RRAGCQ9HB90 399 aa23.21■■□□□ 1.31
CLN3-205ENST00000359984 NYAP2Q9P242 653 aa23.21■■□□□ 1.31
CLN3-205ENST00000359984 ZBTB21Q9ULJ3 1066 aa23.21■■□□□ 1.31
CLN3-205ENST00000359984 PTPDC1A2A3K4 754 aa23.2■■□□□ 1.3
CLN3-205ENST00000359984 EEF2P13639 858 aaKnown RBP23.2■■□□□ 1.3
CLN3-205ENST00000359984 PPP2R5BQ15173 497 aa23.2■■□□□ 1.3
CLN3-205ENST00000359984 NTRK3Q16288 839 aa23.2■■□□□ 1.3
CLN3-205ENST00000359984 USP48Q86UV5 1035 aa23.2■■□□□ 1.3
CLN3-205ENST00000359984 ZNF341Q9BYN7 854 aa23.2■■□□□ 1.3
CLN3-205ENST00000359984 SSC5DA1L4H1 1573 aa23.2■■□□□ 1.3
CLN3-205ENST00000359984 CCDC196A0A1B0GTZ2 297 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 PPFIA3O75145 1194 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 VEGFAP15692 232 aaPredicted RBP23.19■■□□□ 1.3
CLN3-205ENST00000359984 ATP2B2Q01814 1243 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 ICA1Q05084 483 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 LRRC47Q8N1G4 583 aaKnown RBP23.19■■□□□ 1.3
CLN3-205ENST00000359984 DDX11Q96FC9 970 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 MAP3K14Q99558 947 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 CHMP5Q9NZZ3 219 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 CIZ1Q9ULV3 898 aaPredicted RBP23.19■■□□□ 1.3
CLN3-205ENST00000359984 MKL1Q969V6 931 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 ZNF112Q9UJU3 913 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 MTMR7Q9Y216 660 aa23.19■■□□□ 1.3
CLN3-205ENST00000359984 POTEIP0CG38 1075 aa23.18■■□□□ 1.3
CLN3-205ENST00000359984 POTEJP0CG39 1038 aa23.18■■□□□ 1.3
CLN3-205ENST00000359984 CPLX2Q6PUV4 134 aaKnown RBP23.18■■□□□ 1.3
CLN3-205ENST00000359984 CTCFLQ8NI51 663 aaPredicted RBP23.18■■□□□ 1.3
CLN3-205ENST00000359984 RBM28Q9NW13 759 aaKnown RBP23.18■■□□□ 1.3
CLN3-205ENST00000359984 FZD1Q9UP38 647 aa23.18■■□□□ 1.3
CLN3-205ENST00000359984 CTNND1O60716 968 aaKnown RBP23.17■■□□□ 1.3
CLN3-205ENST00000359984 HMGN5P82970 282 aaKnown RBP23.17■■□□□ 1.3
CLN3-205ENST00000359984 GRM4Q14833 912 aa23.17■■□□□ 1.3
CLN3-205ENST00000359984 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.17■■□□□ 1.3
CLN3-205ENST00000359984 CDKL5O76039 1030 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms