RNA–Protein interactions for RNA: ENST00000355572.6

PDLIM7-201, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best) BASIC

Gene PDLIM7, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-201ENST00000355572 TNPO2O14787 897 aaKnown RBP20.18■□□□□ 0.82
PDLIM7-201ENST00000355572 CNMDO75829 334 aa20.18■□□□□ 0.82
PDLIM7-201ENST00000355572 AKR1B1P15121 316 aa20.18■□□□□ 0.82
PDLIM7-201ENST00000355572 HERVK_113P62684 666 aa20.18■□□□□ 0.82
PDLIM7-201ENST00000355572 C12orf60Q5U649 245 aa20.18■□□□□ 0.82
PDLIM7-201ENST00000355572 SEC62Q99442 399 aaKnown RBP20.18■□□□□ 0.82
PDLIM7-201ENST00000355572 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.18■□□□□ 0.825e-7■■■□□ 17
PDLIM7-201ENST00000355572 SLC4A4Q9Y6R1 1079 aa20.18■□□□□ 0.82
PDLIM7-201ENST00000355572 CTR9Q6PD62 1173 aa20.17■□□□□ 0.82
PDLIM7-201ENST00000355572 USP17L2Q6R6M4 530 aa20.17■□□□□ 0.82
PDLIM7-201ENST00000355572 NBPF11Q86T75 865 aa20.17■□□□□ 0.82
PDLIM7-201ENST00000355572 STRBPQ96SI9 672 aaKnown RBP20.17■□□□□ 0.82
PDLIM7-201ENST00000355572 EPB41L4AQ9HCS5 686 aaPredicted RBP20.17■□□□□ 0.82
PDLIM7-201ENST00000355572 GJD2Q9UKL4 321 aa20.17■□□□□ 0.82
PDLIM7-201ENST00000355572 ALPK3Q96L96 1907 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 MYH4Q9Y623 1939 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 GSG1L2A8MUP6 293 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 ADCY3O60266 1144 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 VCAM1P19320 739 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 HOXD10P28358 340 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 GCLCP48506 637 aaPredicted RBP20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 IRX3P78415 501 aaPredicted RBP20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 TRIM32Q13049 653 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 KIAA1683Q9H0B3 1180 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 UNC93B1Q9H1C4 597 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 PORCNQ9H237 461 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 ATP8A2Q9NTI2 1148 aa20.16■□□□□ 0.82
PDLIM7-201ENST00000355572 MPHOSPH10O00566 681 aaKnown RBP20.15■□□□□ 0.82
PDLIM7-201ENST00000355572 CCL5P13501 91 aa20.15■□□□□ 0.82
PDLIM7-201ENST00000355572 CDK8P49336 464 aa20.15■□□□□ 0.82
PDLIM7-201ENST00000355572 PABPC4Q13310 644 aaKnown RBP eCLIP20.15■□□□□ 0.823e-8■□□□□ 8.5
PDLIM7-201ENST00000355572 FEZ1Q99689 392 aa20.15■□□□□ 0.82
PDLIM7-201ENST00000355572 TMEM106CQ9BVX2 250 aa20.15■□□□□ 0.82
PDLIM7-201ENST00000355572 TTC41PQ6P2S7 1318 aa20.14■□□□□ 0.81
PDLIM7-201ENST00000355572 RNF113AO15541 343 aaKnown RBP20.14■□□□□ 0.81
PDLIM7-201ENST00000355572 IRF5Q13568 498 aa20.14■□□□□ 0.81
PDLIM7-201ENST00000355572 C16orf86Q6ZW13 317 aa20.14■□□□□ 0.81
PDLIM7-201ENST00000355572 STK11IPQ8N1F8 1099 aa20.14■□□□□ 0.81
PDLIM7-201ENST00000355572 APPBP2Q92624 585 aa20.14■□□□□ 0.81
PDLIM7-201ENST00000355572 PAGR1Q9BTK6 254 aa20.14■□□□□ 0.81
PDLIM7-201ENST00000355572 FRMPD3Q5JV73 1810 aa20.13■□□□□ 0.81
PDLIM7-201ENST00000355572 ANKRD45Q5TZF3 282 aa20.13■□□□□ 0.81
PDLIM7-201ENST00000355572 CATSPERGQ6ZRH7 1159 aa20.13■□□□□ 0.81
PDLIM7-201ENST00000355572 EXOC6Q8TAG9 804 aa20.13■□□□□ 0.81
PDLIM7-201ENST00000355572 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.13■□□□□ 0.81
PDLIM7-201ENST00000355572 CABP5Q9NP86 173 aa20.13■□□□□ 0.81
PDLIM7-201ENST00000355572 TAOK2Q9UL54 1235 aa20.13■□□□□ 0.81
PDLIM7-201ENST00000355572 FOXP2O15409 715 aa20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 GPAA1O43292 621 aa20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 INHAP05111 366 aa20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 MX1P20591 662 aa20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 ERVK-9P63128 1117 aa20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 ERVK-24P63145 666 aa20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 HDAC1Q13547 482 aaPredicted RBP20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 ZSCAN25Q6NSZ9 544 aa20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 SLAIN1Q8ND83 568 aa20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 RPAP3Q9H6T3 665 aaPredicted RBP20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 BTBD7Q9P203 1132 aa20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 ZNFX1Q9P2E3 1918 aaKnown RBP20.12■□□□□ 0.81
PDLIM7-201ENST00000355572 SPDYE16A6NNV3 312 aaPredicted RBP20.11■□□□□ 0.81
PDLIM7-201ENST00000355572 IGHDP01880 384 aa20.11■□□□□ 0.81
PDLIM7-201ENST00000355572 COA7Q96BR5 231 aa20.11■□□□□ 0.81
PDLIM7-201ENST00000355572 GPATCH3Q96I76 525 aa20.11■□□□□ 0.81
PDLIM7-201ENST00000355572 SWAP70Q9UH65 585 aa20.11■□□□□ 0.81
PDLIM7-201ENST00000355572 USP17L15C9J2P7 530 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 USP17L13C9JLJ4 530 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 USP17L11C9JVI0 530 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 USP17L18D6R9N7 530 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 USP17L22D6RA61 530 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 USP17L17D6RBQ6 530 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 USP17L19D6RCP7 530 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 USP17L20D6RJB6 530 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 USP17L24Q0WX57 530 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 CCDC129Q6ZRS4 1044 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 TMEM179Q6ZVK1 233 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 GPRC5AQ8NFJ5 357 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 PXYLP1Q8TE99 480 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 TRIB2Q92519 343 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 RNF208Q9H0X6 261 aa20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 BIN2Q9UBW5 565 aaPredicted RBP20.1■□□□□ 0.81
PDLIM7-201ENST00000355572 ROBO3Q96MS0 1386 aa20.09■□□□□ 0.81
PDLIM7-201ENST00000355572 GLRX3O76003 335 aaKnown RBP20.09■□□□□ 0.81
PDLIM7-201ENST00000355572 SBK1Q52WX2 424 aa20.09■□□□□ 0.81
PDLIM7-201ENST00000355572 ZMYM1Q5SVZ6 1142 aa20.09■□□□□ 0.81
PDLIM7-201ENST00000355572 USP6NLQ92738 828 aa20.09■□□□□ 0.81
PDLIM7-201ENST00000355572 GJB1P08034 283 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 CYP2B6P20813 491 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 RASA1P20936 1047 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 GJA8P48165 433 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 USP14P54578 494 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 ICA1Q05084 483 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 CCL14Q16627 93 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 PRPF38BQ5VTL8 546 aaKnown RBP20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 GPR142Q7Z601 462 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 UBE2Q1Q7Z7E8 422 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 SPICE1Q8N0Z3 855 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 ARPP21Q9UBL0 812 aaPredicted RBP20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 TMX2Q9Y320 296 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 TACC3Q9Y6A5 838 aa20.08■□□□□ 0.81
PDLIM7-201ENST00000355572 MINDY4BA8MYZ0 360 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 244.7 ms