RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 LRRIQ1Q96JM4 1722 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 DKC1O60832 514 aaKnown RBP eCLIP16.72■□□□□ 0.27
COL17A1-201ENST00000353479 ZRSR2Q15696 482 aaKnown RBP16.72■□□□□ 0.27
COL17A1-201ENST00000353479 MYSM1Q5VVJ2 828 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 SYNE4Q8N205 404 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 PUS7LQ9H0K6 701 aaKnown RBP16.72■□□□□ 0.27
COL17A1-201ENST00000353479 AZI2Q9H6S1 392 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 PPP1R2P41236 205 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 BIRC3Q13489 604 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 GADL1Q6ZQY3 521 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 STAMQ92783 540 aa16.72■□□□□ 0.27
COL17A1-201ENST00000353479 DDAH1O94760 285 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 CYP21A2P08686 494 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 FNBP1Q96RU3 617 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 TBC1D7Q9P0N9 293 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 DNAI1Q9UI46 699 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 LUC7L2Q9Y383 392 aaKnown RBP16.71■□□□□ 0.27
COL17A1-201ENST00000353479 TMEM232C9JQI7 657 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 CCDC175P0C221 793 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 RASGRF1Q13972 1273 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 HERC4Q5GLZ8 1057 aaPredicted RBP16.71■□□□□ 0.27
COL17A1-201ENST00000353479 STK24Q9Y6E0 443 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 SCG2P13521 617 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 PDIA3P30101 505 aaKnown RBP16.71■□□□□ 0.27
COL17A1-201ENST00000353479 GJC1P36383 396 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 DIXDC1Q155Q3 683 aa16.71■□□□□ 0.27
COL17A1-201ENST00000353479 TMEM110-MUSTN1A8MSY1 372 aa16.71■□□□□ 0.26
COL17A1-201ENST00000353479 NOSTRINQ8IVI9 506 aa16.71■□□□□ 0.26
COL17A1-201ENST00000353479 VPS16Q9H269 839 aa16.71■□□□□ 0.26
COL17A1-201ENST00000353479 PCP11498 1178 aaKnown RBP16.7■□□□□ 0.26
COL17A1-201ENST00000353479 RBM6P78332 1123 aaKnown RBP16.7■□□□□ 0.26
COL17A1-201ENST00000353479 KRT83P78385 493 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 MAP3K9P80192 1104 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 TBC1D9BQ66K14 1250 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 OSBP2Q969R2 916 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 DALRD3Q5D0E6 543 aaKnown RBP16.7■□□□□ 0.26
COL17A1-201ENST00000353479 MASTLQ96GX5 879 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 KIF5AQ12840 1032 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 STRN3Q13033 797 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 FBXO11Q86XK2 927 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 TTC16Q8NEE8 873 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 PIH1D3Q9NQM4 214 aaKnown RBP16.7■□□□□ 0.26
COL17A1-201ENST00000353479 RNF216Q9NWF9 866 aaPredicted RBP16.7■□□□□ 0.26
COL17A1-201ENST00000353479 INF2Q27J81 1249 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 CSGALNACT2Q8N6G5 542 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 CERKQ8TCT0 537 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 PLVAPQ9BX97 442 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 JCADQ9P266 1359 aa16.7■□□□□ 0.26
COL17A1-201ENST00000353479 TESPA1A2RU30 521 aaPredicted RBP16.69■□□□□ 0.26
COL17A1-201ENST00000353479 TACC1O75410 805 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 FLOT1O75955 427 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 BRD1O95696 1058 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 SPICE1Q8N0Z3 855 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 DYDC1Q8WWB3 177 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 PIK3C2BO00750 1634 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 ACTN2P35609 894 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 TPH2Q8IWU9 490 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 MYCT1Q8N699 235 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 ARHGEF1Q92888 912 aaKnown RBP16.69■□□□□ 0.26
COL17A1-201ENST00000353479 BLZF1Q9H2G9 400 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 BCCIPQ9P287 314 aaKnown RBP eCLIP16.69■□□□□ 0.26
COL17A1-201ENST00000353479 ARHGEF40Q8TER5 1519 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 SYNRGQ9UMZ2 1314 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 GAS7O60861 476 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 TBC1D8BQ0IIM8 1120 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 POSTNQ15063 836 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 ARHGEF16Q5VV41 709 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 TTLL6Q8N841 843 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 SCRN1Q12765 414 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 KIAA0753Q2KHM9 967 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 CC2D2BQ6DHV5 1058 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 NLRX1Q86UT6 975 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 EEF2P13639 858 aaKnown RBP16.69■□□□□ 0.26
COL17A1-201ENST00000353479 PAK1Q13153 545 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 NOLC1Q14978 699 aaKnown RBP eCLIP16.69■□□□□ 0.26
COL17A1-201ENST00000353479 PRR16Q569H4 304 aa16.69■□□□□ 0.26
COL17A1-201ENST00000353479 C21orf2O43822 256 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 CALUO43852 315 aaPredicted RBP16.68■□□□□ 0.26
COL17A1-201ENST00000353479 MECOMQ03112 1051 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 MRPL11Q9Y3B7 192 aaKnown RBP16.68■□□□□ 0.26
COL17A1-201ENST00000353479 PTPRMP28827 1452 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 GCOM1H8Y6P7 765 aaPredicted RBP16.68■□□□□ 0.26
COL17A1-201ENST00000353479 POLR2MP0CAP2 368 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 APBB1IPQ7Z5R6 666 aaPredicted RBP16.68■□□□□ 0.26
COL17A1-201ENST00000353479 FERMT1Q9BQL6 677 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 SWAP70Q9UH65 585 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 LRRC7Q96NW7 1537 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 GOLGA6L10A0A0M3HER8 536 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 KIAA0754O94854 1291 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 GDF11O95390 407 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 CCDC17Q96LX7 622 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 NEXMIFQ5QGS0 1516 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 POTEB2H3BUK9 544 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 KRT86O43790 486 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 EXOC7Q9UPT5 735 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 PAXBP1Q9Y5B6 917 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 PNPLA6Q8IY17 1366 aa16.68■□□□□ 0.26
COL17A1-201ENST00000353479 KARSQ15046 597 aaKnown RBP16.67■□□□□ 0.26
COL17A1-201ENST00000353479 GUCA1BQ9UMX6 200 aa16.67■□□□□ 0.26
COL17A1-201ENST00000353479 BTBD18B2RXH4 712 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms